| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0003 |
|---|
| Symbol | |
|---|
| ID | 6161735 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | + |
|---|
| Start bp | 2965 |
|---|
| End bp | 5559 |
|---|
| Gene Length | 2595 bp |
|---|
| Protein Length | 864 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 641662748 |
|---|
| Product | DNA gyrase, B subunit |
|---|
| Protein accession | YP_001789044 |
|---|
| Protein GI | 171056695 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0187] Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit |
|---|
| TIGRFAM ID | [TIGR01059] DNA gyrase, B subunit
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.0000665074 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGACCGACC CGAAAAGCCT CCCCCAGGAA CCCAACGGCA GCGCCGATGC CGACGGCGTG
ACGCGCCGCG ATCTGCCTGA CGTCGAAGGC GTGCCGGTCT CGACCGGGGC GGAAGCGTCG
GCGGCCTACG GCTCCGACTC GATCCAGATC CTCGAAGGCC TGGAAGCGGT GCGCAAGCGC
CCGGGCATGT ACATCGGCGA CACCAGCGAC GGCACCGGCC TGCACCACCT GGTGTTCGAG
GTGGTCGACA ACTCGATCGA CGAGGCCCTG GCCGGCCACT GCGACGACAT CATCGTCACC
ATCCACACCG ACAACTCGAT TTCCGTCATC GACAACGGTC GCGGCATCCC GACCGGCGTC
AAGATGGACG ACAAGCACGA GCCCAAGCGC AGTGCCGCCG AGATCGCGCT GACCGAGCTG
CACGCGGGTG GCAAGTTCAA CCAGAACAGC TACAAGGTCT CGGGCGGCCT GCACGGCGTG
GGCGTCTCCT GCGTCAACGG CCTGTCGACC TGGCTGCGCC TGACGGTGCG CCGCGACGGC
CGCGCGCATT TCATGGAGTT CCGCCAGGGC ATCCCGCAAG ACCGGGTGCT GGAACGGCGC
GACGGCTTCG AGGTGAGCCC GATGAAGGTC ATCGGCGAGA CCGACAAGCG CGGCACCGAG
GTGCACTTCC TGCCCGACCA CACGATCTTC TCGAACATCG ACTTCCACTA CGAGATCCTC
AGCAAGCGGC TGCGCGAACT CTCGTTCCTG AACAACGGCG TCAAGATCCG CCTGGTCGAC
GAGCGCAACA ACAAGGAAGA CAACTTCGCC TACGCCGGCG GTGTCAAGGG CTTCGTCGAG
TTCGTCAACA AGGGCAAGAA GGTCCTGCAC GGCAACATCT TCCACGCCCG CGGCGACAAG
ATGAGCGACA ACCAGACCAA CGTCGGCGTC GAAGTGGCGA TGCAGTGGAA CGAGAGCTAC
AACGAGAACG TGCTCTGCTT CACCAACAAC ATCCCGCAGC GTGACGGCGG CACCCACCTG
ACCGGCCTGC GTGCGGCGAT GACGCGTGTC ATCAACAAGT ACATCGACGA CAACGACATC
GCCAAGAAGG CCAAGGTCGA GATCACCGGC GACGACATGC GCGAGGGTCT GGCCTGCGTC
GTCAGCGTCA AGGTGCCCGA GCCCAAGTTC TCGAGCCAGA CCAAGGACAA GCTGGTGTCG
AGCGAAGTGC GCGCGCCGGT CGAGGACATC GTCAGCCGCC TGCTGACCGA CTGGCTGCTC
GAGAACCCGA CCGACGCCAA GACCATCTGC AGCAAGATCG TCGACGCCGC GCGCGCCCGC
GACGCCGCCC GCAAGGCGCG CGAGATGACG CGCCGCAAGG GCGTGCTCGA CGGCATGGGC
CTGCCCGGCA AGCTGGCCGA CTGCCAGGAG AAGGACCCGT CGCTGTGCGA GATCTACCTG
GTGGAGGGCG ACTCCGCCGG CGGCTCGGCC AAGCAGGGCC GCGACCGGAA GTTCCAGGCC
ATCCTGCCGC TGCGCGGCAA GATCCTGAAC GTCGAGAAGG CGCGCTACGA GAAGCTGCTG
ACCAGCAACG AGATCCTGAC GCTGATCACC GCGCTGGGCA CCGGCATCGG CAAGGGCATG
GGCGGGGACG ACTTCAACCC CGACAAGCTG CGCTACCACC GCATCATCAT CATGACCGAC
GCCGACGTCG ACGGCGCCCA CATCCGCACC CTGCTGCTGA CCTTCTTCTT CCGCCAGATG
CCCGACCTGG TCGAGCGCGG CAACATCTAC ATCGCCCAGC CGCCGCTCTA CAAGGTCAAG
CACGGCAAGC ACGAGCAGTA CCTGAAGGAC GGCAGCGAGC TCGACGCCTA CCTGCTCAAG
GTCGCGATCG ACGGCGCCAC GGTCGAACCC GGTGCCGGCA AGCCCGCGAT CACCGGGGCC
GCGCTCGAAG AGCTCGCCCG CCAATACGTG CAGGCCAGCA ACGTGATCGC GCGGCTGTCG
AACTGGATGG ACATCGAAGC GCTGCGTGCC ATCAGCGACG GCCTGACGCT CGACCTCGAC
GACGCACAGA AAGCCGAAGC CAGCGCCGTG GCCCTGGCCG GCGCGCTGCT TGCGGTTGGT
AGTTCGGCCG AGGTGGCCGC CGAATACGAC GCCCGCACCG ACAAGCACCA CCTGCGCATC
AGCCGCCGCC ACCACGGCAA CATCAAGAGC AGCGTCATCA CGCAGGACTT CGTGCACGGC
GCCGACTACG AGGCGCTCAG CCGCGCCGGC ATCACCTTCA AGGGCCTGCT GGCCGACGAC
GCCACCGTCA AGCGCGGCGA GGGTGACAAG CAGAAGACCG CCAAGGCCGG CGACTTCCGC
GTCGCGATGG CCTGGCTGAT GCAGCAGGCC GAATCGAGCG TCGGCCGCCA GCGCTACAAG
GGCCTGGGCG AGATGAATCC CGGCCAGCTC TGGGAAACGA CGATGGACCC GACCGTGCGC
CGCCTGCTGC GCGTGCAGAT CGAAGACGCG ATCGAGGCCG ACAAGGTGTT CACGATGCTG
ATGGGCGACG AGGTGGAGCC GCGGCGGGAT TTCATCGAGA GCAATGCGTT GAGGGCGGCG
AACATCGACG TGTGA
|
|---|
| Protein sequence | MTDPKSLPQE PNGSADADGV TRRDLPDVEG VPVSTGAEAS AAYGSDSIQI LEGLEAVRKR
PGMYIGDTSD GTGLHHLVFE VVDNSIDEAL AGHCDDIIVT IHTDNSISVI DNGRGIPTGV
KMDDKHEPKR SAAEIALTEL HAGGKFNQNS YKVSGGLHGV GVSCVNGLST WLRLTVRRDG
RAHFMEFRQG IPQDRVLERR DGFEVSPMKV IGETDKRGTE VHFLPDHTIF SNIDFHYEIL
SKRLRELSFL NNGVKIRLVD ERNNKEDNFA YAGGVKGFVE FVNKGKKVLH GNIFHARGDK
MSDNQTNVGV EVAMQWNESY NENVLCFTNN IPQRDGGTHL TGLRAAMTRV INKYIDDNDI
AKKAKVEITG DDMREGLACV VSVKVPEPKF SSQTKDKLVS SEVRAPVEDI VSRLLTDWLL
ENPTDAKTIC SKIVDAARAR DAARKAREMT RRKGVLDGMG LPGKLADCQE KDPSLCEIYL
VEGDSAGGSA KQGRDRKFQA ILPLRGKILN VEKARYEKLL TSNEILTLIT ALGTGIGKGM
GGDDFNPDKL RYHRIIIMTD ADVDGAHIRT LLLTFFFRQM PDLVERGNIY IAQPPLYKVK
HGKHEQYLKD GSELDAYLLK VAIDGATVEP GAGKPAITGA ALEELARQYV QASNVIARLS
NWMDIEALRA ISDGLTLDLD DAQKAEASAV ALAGALLAVG SSAEVAAEYD ARTDKHHLRI
SRRHHGNIKS SVITQDFVHG ADYEALSRAG ITFKGLLADD ATVKRGEGDK QKTAKAGDFR
VAMAWLMQQA ESSVGRQRYK GLGEMNPGQL WETTMDPTVR RLLRVQIEDA IEADKVFTML
MGDEVEPRRD FIESNALRAA NIDV
|
|---|
| |