| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcenmc03_5932 |
|---|
| Symbol | |
|---|
| ID | 6128736 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia cenocepacia MC0-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010515 |
|---|
| Strand | - |
|---|
| Start bp | 3127719 |
|---|
| End bp | 3128792 |
|---|
| Gene Length | 1074 bp |
|---|
| Protein Length | 357 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 641653016 |
|---|
| Product | type III secretion system protein HrcU |
|---|
| Protein accession | YP_001779543 |
|---|
| Protein GI | 170738283 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1377] Flagellar biosynthesis pathway, component FlhB |
|---|
| TIGRFAM ID | [TIGR01404] type III secretion protein, YscU/HrpY family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 0.897512 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.0426598 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGACG AGAAAACCGA ACAGCCCACG CGACGCAAGC TCAAGGAGGC GCGCAAGAAA
GGCACCGTGG CGAAGAGTGT CGATCTCGTC GCGGCGGTAC TCGTGCTCGT CTCGCTCGCG
CTCTTTACGT TCGCATGGCA TCCGCTGCTC GACGCCCTCC ACCAGAACAT TTCGCGCGCA
ATCGACTTCT GCGGATCCGA GCGTTCGATG CACACGCTGT GGTCCGTCCT GATGCACGAG
CTGGCCAACG GCGCGATCGC GTGCTGCGCG ATCAGCGTGG CCGCGGCGCT CGCGGCCGCG
CTGTCGATCG GCGCGCAGGT GGGCCTGCAG GTTTCGTTCG ACCCGGTCAT GCCGAAGATG
GACCGGCTGT CGCCGGCGGC CGGGCTCAAG CAGATCTTCT CGAAGCGCGC GCTGATCGAT
CTGCTGAAGA TGAGCGTCAA GGCCGTGGTG ATCGCCGCCG CGCTGTGGCA CGTGATCGTG
TCGCTGTTTC CATTGATCAC GTCCGCGATG GCCGAGCCGC TGGCGGCGCT CTCGCAGATT
CTGTGGCACG CGCTGCTGAA GCTGCTGTTC GCGGCTGCCG TGCTGTTCCT CGTGGTCGGC
GTGGTGGACT GGAAGATCCA GCACTGGCTG ATGATGCGCG CACAGCGCAT GTCGAAGGAT
GAGGTCAAGC GCGAACTGAA GGAGCGCGAA GGCGAGCCGA AGCTCAAGCA CGAGCGGCGC
AAGCGCGCGA AGGAACTCGT CAACGGCGGC GGCGAAAGCC TGTCGGGGGC CGTCGGCCGC
GCGAACGTGG TGGTCGTCAA TCCGACGCAT TACGCGGTCG CGCTGCGTTA CGTGCGCGGC
GAAACGCCGT TGCCGGTCGT GCTCGCGAAG GGCATCGACG ACGCGGCACG CGAGATTCGT
GCGCTGGCGA CGCAACGCGG CGTACCGATC GTCGCCAACC CACCCGTCGC GCGCGCGCTT
TACGAGGTGG CCGAGCATCG GCCGATTCCG TCCGAACTGT TCGAAGTCGT CGCGGCGATC
CTGCGCTGGG TCGAAGCGGT CGGCCCCGGC ACGCCCGCTG CCGAACCCCG TTGA
|
|---|
| Protein sequence | MSDEKTEQPT RRKLKEARKK GTVAKSVDLV AAVLVLVSLA LFTFAWHPLL DALHQNISRA
IDFCGSERSM HTLWSVLMHE LANGAIACCA ISVAAALAAA LSIGAQVGLQ VSFDPVMPKM
DRLSPAAGLK QIFSKRALID LLKMSVKAVV IAAALWHVIV SLFPLITSAM AEPLAALSQI
LWHALLKLLF AAAVLFLVVG VVDWKIQHWL MMRAQRMSKD EVKRELKERE GEPKLKHERR
KRAKELVNGG GESLSGAVGR ANVVVVNPTH YAVALRYVRG ETPLPVVLAK GIDDAAREIR
ALATQRGVPI VANPPVARAL YEVAEHRPIP SELFEVVAAI LRWVEAVGPG TPAAEPR
|
|---|
| |