| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcenmc03_5912 |
|---|
| Symbol | |
|---|
| ID | 6128716 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia cenocepacia MC0-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010515 |
|---|
| Strand | + |
|---|
| Start bp | 3107547 |
|---|
| End bp | 3109181 |
|---|
| Gene Length | 1635 bp |
|---|
| Protein Length | 544 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641652996 |
|---|
| Product | type II secretion system protein E |
|---|
| Protein accession | YP_001779523 |
|---|
| Protein GI | 170738263 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.444946 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.00648046 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGAGCTCAC TTCGATTGGG GCGCCCGGGC GCCGCGGCGC CGCAGCGGGG CGCCGCCGGC
GCCGATACCG CCCATCCGTT GTCCGGCGAA GGCCCGTGGG CCGCGAGCGC GGAAGAGCGC
AAGCTGCTGT GCCTGCTCGA CGACGGCCGC CTGCTGATCG CCGAGGGCCA CGAACTGAGC
CCGTACGTGC TGTCCTATCG CGCGCGGCTC GACCGGCTTC GCCATCATTA CCGGATGCAG
GCGGTCGGGC TCGACGAGGT GCGGCGCGCG TACGAGGGGA TGCGCTCCGA CGGCACCGGC
GAACGCGTCG ATCACACGGC GATGCAGGTC CTCGCGAAGG AACTGATCGC GCACGCGTGC
CGCGAACGTG CGTCCGACAT TCACATCCGC GTGAAGCGCT TCAGCACGGA GATTCTGTTT
CGCATTCACA ACGAGCTGGT GCGTGTGAGC GAGCAGACCC GCGAGCAGGG CGCGCGCCTG
CTCGCGACGC TCTATGCGGC GATGGCGAGC GTCTCGGACA ACACGTACAA GCCGCACGAA
CGCCAGGACG CGGCGATCGG CGACCGCGAC AAACTGCCTG CCGAGCTGTT CGGCGTCCGC
ATTGCAACGG CCCCCACCAG CATCGGCAAC GTGATGGTGC TGCGACTGCT CTACAACGAT
GCGGGCGATT CGATCGACCT GCGCCTGCTC GGATTCTCCG ATGCGCAGGC CGCGGAGATC
GACGAATTGC GGCGCCTGCC GCACGGCATG AACATCATCA GCGGGCCGAC GGGCTCGGGC
AAGTCGACCA CGCTGCAGCG CGTGCTGGCC GGGCAGATCG CCGAGACCCA CGGGTCCGTC
CACGTCATTA CCGTGGAGGA TCCGGTCGAA TATCCGATCG CGGGCGCGGT GCAGACGCCG
GTCGTCAACG CGCCGACCGA GGAAGCACGC TCGCTGGCGT TCGCCGGCGC CATCGCCAAT
GCGATGCGGC TCGACCCGGA CACGATCATG ATCGGCGAGG TGCGCGACCG CGCTTCCGCG
CAAAGCGCAT TGCGCGCATC GATGACCGGC CATCAGGTCT GGACCACCGT TCATGCCAAC
GGCGCGCTCG CGATCATCGA CCGGCTCGTC GATCTCGGCC TGCCGCTCGC GATGGTGACC
GACGAATCGC TGATCACGGG GCTCGTCAGC CAGCGCCTCG TCAAGCTGCT GTGCCCGCAT
TGCAAGCAGC GGCTCGCGGG TTCGCCGCAG CAGGACGACG CGTTGGCGGC GCGCGTGCGC
CGCGCGGTCG GCGCATCGTT CGACAAGGTC TTCGTGCAGG GGCCCGGCTG CGAACATTGC
GGCGGGCGCG GCACCATCGG CCGTACGGTC GTCGCCGAGG TGATCCGGCC GGATGCGCGG
CTGTTCGCCT ATCTGCGCGA GGGCGACAAA CATGCGGCAC GCGCATATTG GCTCGACGAG
CTCGGCGGGC GCACGACCGT CGAGCACACG ATCGAGAAAG TCGCCGCGGG GCTGGTCGAT
CCGCGCGCGG CCGAACGCAT CGTCGGCCCG CTCGTGGCGC GCAACGAACC GGTGCGGCTG
CGTCCGGTCG ACACGACGGA AGGCCGGCGC GGTCACCCGG GTGGCGCGGT CGCGGGAGCG
GGCCATGAAT CTTGA
|
|---|
| Protein sequence | MSSLRLGRPG AAAPQRGAAG ADTAHPLSGE GPWAASAEER KLLCLLDDGR LLIAEGHELS
PYVLSYRARL DRLRHHYRMQ AVGLDEVRRA YEGMRSDGTG ERVDHTAMQV LAKELIAHAC
RERASDIHIR VKRFSTEILF RIHNELVRVS EQTREQGARL LATLYAAMAS VSDNTYKPHE
RQDAAIGDRD KLPAELFGVR IATAPTSIGN VMVLRLLYND AGDSIDLRLL GFSDAQAAEI
DELRRLPHGM NIISGPTGSG KSTTLQRVLA GQIAETHGSV HVITVEDPVE YPIAGAVQTP
VVNAPTEEAR SLAFAGAIAN AMRLDPDTIM IGEVRDRASA QSALRASMTG HQVWTTVHAN
GALAIIDRLV DLGLPLAMVT DESLITGLVS QRLVKLLCPH CKQRLAGSPQ QDDALAARVR
RAVGASFDKV FVQGPGCEHC GGRGTIGRTV VAEVIRPDAR LFAYLREGDK HAARAYWLDE
LGGRTTVEHT IEKVAAGLVD PRAAERIVGP LVARNEPVRL RPVDTTEGRR GHPGGAVAGA
GHES
|
|---|
| |