| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcenmc03_5214 |
|---|
| Symbol | |
|---|
| ID | 6128025 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia cenocepacia MC0-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010515 |
|---|
| Strand | + |
|---|
| Start bp | 2313363 |
|---|
| End bp | 2314331 |
|---|
| Gene Length | 969 bp |
|---|
| Protein Length | 322 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641652305 |
|---|
| Product | choline ABC transporter, periplasmic binding protein |
|---|
| Protein accession | YP_001778833 |
|---|
| Protein GI | 170737573 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2113] ABC-type proline/glycine betaine transport systems, periplasmic components |
|---|
| TIGRFAM ID | [TIGR03414] choline ABC transporter, periplasmic binding protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 0.931913 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACGGC AATGCAATGC AGCAATCCGA AGGATCGGCG CGGCGCTTGC CGCCGCCGCG
TGCGTGGCGG CGACGCAGCC GGCGTATGCC GCCGATCCGC AGACATGCGA CGCCGTGAAG
ATGGCGGCGC CCGGCTGGAC CGACATCGAC GCGACGAACG CGATGGCGGG CGTCGTGCTG
AAGGCGCTCG GCTACCGGCA GGACGTGGCG AACCTGTCGG TGCCGATCAC GTACCAGGGG
TTGAAGAAAG GGCAGGTCGA CGTGTTCCTC GGCAACTGGA TGCCCGCGCA GGCGCCGCTC
GTGAAGCCGT TCGTCGACGA AAAATCGATC GACGTGCTGC ACGCGAACCT GAGTGGGGCG
AAATTCACGC TCGCAGTGCC CGACTACGTG GCCGCGGCCG GCGTGCACAC GTTCGCCGAT
CTCGCGCGCT ACGCGGACCG TTTCGGCGGC AAGATCTACG GGATCGAGCC CGGCGCGCCC
GCGAACCAGA ACATCAAGCG GATGCTGTCA GACCACGTGC TGGGGCCCGC GAACTGGTCG
CTCGTCGAAT CGAGCGAGAC GGGCATGCTC ACGCAGGTCG AGCGCGCGGT GCGCGACAAG
CGCTGGATCG TGTTTCTCGG CTGGGAGCCG CATCTGATGA ACACGAAGTT TCATCTGACG
TATCTGTCGG GCGGCGATGC GTACTTCGGC CCGAACTACG GCGGCGCGAC GGTCAACACG
GTCACGCGTG CCGGGTTCGC CGGCCAGTGC ACGAACCTCG CGCGGCTGTT CCGGCAGATG
ACGTTCTCCG TCGACGTCGA GAACCGGATG ATCGCCGACA TGCTCGACAA CAAGACCTCG
CCCGCGCTCG CGGCGCAACA TGCGCTGAAG GCCGAGCCGG CGCTGGTCGC CGGCTGGCTC
GACGGCGTGA CGACGGCGGC CGGCGCGCCG GGCCTGCCGG CCGTGCGCGC GGCCCTCGAC
GGCCGCTGA
|
|---|
| Protein sequence | MKRQCNAAIR RIGAALAAAA CVAATQPAYA ADPQTCDAVK MAAPGWTDID ATNAMAGVVL
KALGYRQDVA NLSVPITYQG LKKGQVDVFL GNWMPAQAPL VKPFVDEKSI DVLHANLSGA
KFTLAVPDYV AAAGVHTFAD LARYADRFGG KIYGIEPGAP ANQNIKRMLS DHVLGPANWS
LVESSETGML TQVERAVRDK RWIVFLGWEP HLMNTKFHLT YLSGGDAYFG PNYGGATVNT
VTRAGFAGQC TNLARLFRQM TFSVDVENRM IADMLDNKTS PALAAQHALK AEPALVAGWL
DGVTTAAGAP GLPAVRAALD GR
|
|---|
| |