Gene Bcenmc03_5110 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBcenmc03_5110 
Symbol 
ID6127922 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia cenocepacia MC0-3 
KingdomBacteria 
Replicon accessionNC_010515 
Strand
Start bp2188498 
End bp2189445 
Gene Length948 bp 
Protein Length315 aa 
Translation table11 
GC content64% 
IMG OID641652202 
Productcholine ABC transporter, periplasmic binding protein 
Protein accessionYP_001778730 
Protein GI170737470 
COG category[E] Amino acid transport and metabolism 
COG ID[COG2113] ABC-type proline/glycine betaine transport systems, periplasmic components 
TIGRFAM ID[TIGR03414] choline ABC transporter, periplasmic binding protein 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value0.405245 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones34 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGCGCC TATTGATCGC AGCGGTGTGC GGGATCGGGG TGACCGCGCC GATGTCGGCC 
GTTTATGCGG CCGATCCGCC CGTGTGCAAG AACGTGCGCT TCGCGGATGT CGGCTGGTCC
GACATCGCGG CGACCACGGG CCTCGCGTCG ACGATGCTGC AGGGGCTCGG CTACAACCCG
ACGAAGACGA TCGCCTCGGT GCCGATCACG TTCGCGGGGA TCAAGAGCAA GCAGATCGAT
GTGTTCCTCG GCTACTGGTC GCCGACGATG GACCCGATCA TCCAGCCGTT CACGAAGGCC
GGCACGATCA AGGTGCTCGC GACGCCGAAC CTGACCGGCG CGAAATACAC GCTCGCGGTG
CCCGACTACG TGTACCAGGG CGGCCTGAAG TCGTTCGCGG ACATCCAGAA GTACGCGGAC
AAGCTCAACG GCAAGATCTA CGGGATCGAG CCGGGCAACG ACGGCAATGC GCTGATCAAG
AAGATGATCG ACGGCAATCA GTTCGGCCTC GGCAAGTTCA AGCTGGTCGA GTCGAGCGAG
GCCGGGATGC TGGTCGAAGT GAATCGCGCG GCCCGCGACA AGCAGTGGAT CGTGTTCCTT
GGGTGGGAAC CGCATCCGAT GAACGTGCAG ATGAAGATCG ACTACCTGAC CGGCGGCGAC
GATGTGTTCG GCCCGAACTA CGGCGAAGCG AAGGTGCTGA CGGCAACCCC GCCCGATTAC
GCGCAACGCT GCCCGAACGT CGCGAAGTTC GTGTCGAACC TGCAGTTCAC GACGTCGATC
GAGAACCACG TGATGGTGCC GATCATGAAC AAGCAGGACC CGAACAAGGC TGCCGCCGAC
TGGCTGAAGG CGAACCCGCA AGCGCTCGAC AAGTGGCTGG CCGGCGTGAC GACGCTCGAC
GGCAAGCCGG GCCTGCCGGC GGTGAAGGCG TACCTCGGCG TGCATTGA
 
Protein sequence
MKRLLIAAVC GIGVTAPMSA VYAADPPVCK NVRFADVGWS DIAATTGLAS TMLQGLGYNP 
TKTIASVPIT FAGIKSKQID VFLGYWSPTM DPIIQPFTKA GTIKVLATPN LTGAKYTLAV
PDYVYQGGLK SFADIQKYAD KLNGKIYGIE PGNDGNALIK KMIDGNQFGL GKFKLVESSE
AGMLVEVNRA ARDKQWIVFL GWEPHPMNVQ MKIDYLTGGD DVFGPNYGEA KVLTATPPDY
AQRCPNVAKF VSNLQFTTSI ENHVMVPIMN KQDPNKAAAD WLKANPQALD KWLAGVTTLD
GKPGLPAVKA YLGVH