| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcenmc03_4629 |
|---|
| Symbol | |
|---|
| ID | 6127449 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia cenocepacia MC0-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010515 |
|---|
| Strand | - |
|---|
| Start bp | 1622724 |
|---|
| End bp | 1623533 |
|---|
| Gene Length | 810 bp |
|---|
| Protein Length | 269 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641651724 |
|---|
| Product | diaminopimelate epimerase |
|---|
| Protein accession | YP_001778257 |
|---|
| Protein GI | 170736997 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0253] Diaminopimelate epimerase |
|---|
| TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 34 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.000265381 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCCGATCG CATTTCAGAA GATGAACGCG AATGGCGATG ACTTCGTCAT CGTCGACCTG
CGCGGTCACG AACACGATCG CGCGCATCCC GTCGACGGCG ACCTCGTGCG GCGCATGGGC
GATCGGCATC GCGGCATCGG CTTCAACCAG CTCGCGGTGA TCTCGGACGG CGACGACGCA
GTCGCGCGCG TCGCGTTCTG GAACCCCGAC GGCTCGGCGC TCGATACGTG CGGCAGCGCG
ACGCGCGGCG TCGCATGGAA GCTGATGCGG GAAACCGGTG CGACGTCGGT CGTGCTGCGC
ACGAATCGCG GGCGCCTGCA CTGTTCGCAG GATGCGGACG GGCTGATCAA GGTCGACATG
GGCGCGCCGC GGCTCGGCTG GCAGGACGTG CCGGTCTCGG AGGCCGTCGA CACGCTCGCG
CTGCCGCTGC CCGGTGCGCC GGCCGCGTGC AGCATGGGCA ATCCGCACTG CACGTTCTTC
GTCGATGATC TCCGCGCGAT CGACGTCGCG ACGCTCGGCC CGACCATCGA AACGCATCCG
CTGTTTCCGC TGAAGACCAA CGTGCATTTC GTTCAGGTCA TCGATCGCAT GCATATCCGT
CTACGTATCT GGGAACGCGG CGGCGGCGTG CCGCTCGGCT CCGGCTCGTG TTCGTGCGGC
GCGGCGGTCA ACGGCATCCG GCGCGGGCTG CTCGACGATA CCGTGCGGGT GACCTGCGAC
GGCGGCGACG TCACCGTTCA ATGGGACGGC GCCGGCAGCG TGTTCCTGAG CGGACCCGTG
ACGTTCGGGT TCAGCGGGGT GTGGCTGTGA
|
|---|
| Protein sequence | MPIAFQKMNA NGDDFVIVDL RGHEHDRAHP VDGDLVRRMG DRHRGIGFNQ LAVISDGDDA
VARVAFWNPD GSALDTCGSA TRGVAWKLMR ETGATSVVLR TNRGRLHCSQ DADGLIKVDM
GAPRLGWQDV PVSEAVDTLA LPLPGAPAAC SMGNPHCTFF VDDLRAIDVA TLGPTIETHP
LFPLKTNVHF VQVIDRMHIR LRIWERGGGV PLGSGSCSCG AAVNGIRRGL LDDTVRVTCD
GGDVTVQWDG AGSVFLSGPV TFGFSGVWL
|
|---|
| |