| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcenmc03_4554 |
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| Symbol | |
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| ID | 6127376 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia cenocepacia MC0-3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010515 |
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| Strand | + |
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| Start bp | 1539880 |
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| End bp | 1540728 |
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| Gene Length | 849 bp |
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| Protein Length | 282 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641651651 |
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| Product | squalene synthase HpnD |
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| Protein accession | YP_001778184 |
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| Protein GI | 170736924 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1562] Phytoene/squalene synthetase |
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| TIGRFAM ID | [TIGR03465] squalene synthase HpnD |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 0.124742 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 0.209496 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGGCCGTTT CCCATTCCGT CGTGGACGAA CAAGAAACCG ACGCCGCTGC CGTCACATCG
GGCAGTTCTT TCTATCTGGC GATGCGCATC CTGCCGGCCG TGCAGCGCGA TGCGATGTTC
CAGGTCTACG CGTTTTGCCG CGCGGTCGAC GACATCGCCG ACAGCGATCT GCCGCGCGCG
GAGCGCAACG CGGGCTTGAA TCGCTGGCGC GCGGACATCG ACGCCTGCTT CGCCGGTCGG
CCGCCGCGCC ACCTGGTCGC GCTCGATCGC GAGATTCGCG CGTTCAACCT GCAGCGCGAC
GATTTCCACG CGATGATCGA CGGAATGGCG ATGGACGCGG CCGAAGATAT CTGCGCGCCC
GACGAGCCGA CGCTCGACCT TTTCTGCGAT CGCGTGGCGA GCGCGGCCGG CCGGCTGTCG
GTGAGGATCT TCGGGATGCC GGAAGCCGAA GGGATCACGC TGTCGCACCA CCTGGGCCGC
GCGCTGCAAC TGACGAACAT CCTGCGCGAC ATCGACGACG ACGCGGCAAT CAACCGGTGC
TACCTGCCGC GCGAGCTGCT CGCGCGCGAA GGCATCGCGA TCACCGATCC GGCGACGATC
GTGCGCGATC CGGCGCTGCC GCGCGTGTGC GCGACGCTCG TCGAGCGCGC GCTCGAGCAC
TTCCGCCAGG CCGACGCGGT GATGGACACC TGCCCGCGTG CGCAGGTGAA GGCGCCGCGC
ATCATGTCGG GCGCGTATCG CTGCATTCTC GAGGCCGCGA TCGCACGCGG CTTTGCCGCA
CCGCGCGCGC CGCTGCGCAA GCCGAAGGCG CGCATGCTGA TGATCGCCGC GCGTTACGCG
CTGTTCTGA
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| Protein sequence | MAVSHSVVDE QETDAAAVTS GSSFYLAMRI LPAVQRDAMF QVYAFCRAVD DIADSDLPRA
ERNAGLNRWR ADIDACFAGR PPRHLVALDR EIRAFNLQRD DFHAMIDGMA MDAAEDICAP
DEPTLDLFCD RVASAAGRLS VRIFGMPEAE GITLSHHLGR ALQLTNILRD IDDDAAINRC
YLPRELLARE GIAITDPATI VRDPALPRVC ATLVERALEH FRQADAVMDT CPRAQVKAPR
IMSGAYRCIL EAAIARGFAA PRAPLRKPKA RMLMIAARYA LF
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