| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcenmc03_4309 |
|---|
| Symbol | |
|---|
| ID | 6127137 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia cenocepacia MC0-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010515 |
|---|
| Strand | + |
|---|
| Start bp | 1273078 |
|---|
| End bp | 1273947 |
|---|
| Gene Length | 870 bp |
|---|
| Protein Length | 289 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641651412 |
|---|
| Product | MscS mechanosensitive ion channel |
|---|
| Protein accession | YP_001777945 |
|---|
| Protein GI | 170736685 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0668] Small-conductance mechanosensitive channel |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.00000550538 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.0000000451244 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGTTTCTCG ATCATCTTCA TCCGGAACGC TGGACGTTCC TGTGGAACGC ATTGTCCACC
CTCTCTCTCA AGCTTGCCGC CGGCCTGGCG CTGCTCGTCG CCGGCTGGTG GCTGTCGAAA
CGCATCGGCA ACTGGCTGAA CCGACTGCTC TCGAACAAGG AGCGCGTCGA CGACACGCTG
CGGCCGATCC TCTGCGACGT CGCGGTATGG GGCATCCGCA TCGTCGCGAT CGTCGGCGCG
CTGTCGCAGC TCGGCATCGA AACCGCGAGC ATCGTCGCGG TGCTCGGCGC GGCCGGCCTC
GCCATCGGGC TCGCGCTGCA GGGCACGATG CAGAACATCG CGGCCGGCAT CATGCTTCTG
CTGCTGCGGC CGTTCAAGGT CGGCGACTAC ATCGACGGCG GCACGGGCGT CGCGGGCACC
GTCGACGAAG TCGGGCTCTT CATGACGCGC CTCACGAAGC CTGACGGCAT CTGCGAGTAC
GTACCCAACA GCGCGCTGTG GGGCAGCTCG ATCCGCAACT ACACGCGCAA CCCGACGCGC
CGCCTCGATC TCGAAGTGGA AGTGTCCGTG CACGACGATA TCGATCGCGC GCTCGCTGCG
CTGCATGCGC TGGCCGTGGC CGATCCCGAC GTGCTGCATG ACCCCGCGCC GGACGTGATG
GTGATGCGTT TCGACGACAG CACGGCCGTC GCGAACATGC GCGTGTGGAC GCATACCGAC
AAGTTCTGGG CGATGCGCTG GCGCCTCGCG CGCCAGGTGC GCAAGACGCT CGCCGAGGCG
GACTGCGCGC TGCCGATCCG CACGCGGGAA CTGCACATCG TGCACGACGC GGAGCGCCGC
GCAGGCGACG CGCGCGTGCG GGTCTTGTAG
|
|---|
| Protein sequence | MFLDHLHPER WTFLWNALST LSLKLAAGLA LLVAGWWLSK RIGNWLNRLL SNKERVDDTL
RPILCDVAVW GIRIVAIVGA LSQLGIETAS IVAVLGAAGL AIGLALQGTM QNIAAGIMLL
LLRPFKVGDY IDGGTGVAGT VDEVGLFMTR LTKPDGICEY VPNSALWGSS IRNYTRNPTR
RLDLEVEVSV HDDIDRALAA LHALAVADPD VLHDPAPDVM VMRFDDSTAV ANMRVWTHTD
KFWAMRWRLA RQVRKTLAEA DCALPIRTRE LHIVHDAERR AGDARVRVL
|
|---|
| |