| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcenmc03_3641 |
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| Symbol | |
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| ID | 6128825 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia cenocepacia MC0-3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010515 |
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| Strand | - |
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| Start bp | 540580 |
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| End bp | 542631 |
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| Gene Length | 2052 bp |
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| Protein Length | 683 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 641650749 |
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| Product | RNA polymerase sigma factor RpoD |
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| Protein accession | YP_001777283 |
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| Protein GI | 170736023 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCAAAA AGCTGAACGA AGTATCCGTC GAAGACGACG CAAATCAGAG CGACGAGCAG
CCCGCAGCCG CGGCTGCACC GGGCAAGTCC AAGGTGCGCG ATCGTCGCGC CAAGGAAAAG
GCGCTGCTGA AGGAAGCGTT CGCGACGAGC ACGCCGGGCA CGGCCGAGGA GCTCGAAGAG
CGCCGCGTGA AACTGCGCGC GCTGATCAAG CTCGGCAAGG AGCGCGGCTT CCTCACGTAC
GCCGAAATCA ACGACCACCT GCCGGACAAC TTCACCGAGA CGGAAGCCCT CGAGGGCATC
ATCGGCACGT TCAACGACAT GGGCGTGGCG GTTTACGAGC AGGCGCCGGA CGCGGAAACG
CTGCTCCTGA ACGACAACGC GCCCGCCGCG TCGTCGGACG ATGAAGTCGA GGAGGAAGCG
GAAGTCGCGC TGTCCACCGT CGATTCGGAA TTCGGCCGCA CGACCGATCC GGTCCGGATG
TACATGCGCG AGATGGGCAC GGTCGAGCTG CTCACGCGCG AAGGCGAAAT CGAGATCGCG
AAGCGGATCG AGGACGGCCT GCGCCACATG GTGATGGCCA TCTCCGCGTG CCCGACGACG
ATCGCCGACA TCCTCGCGAT GGCCGAACGC GTCGCGAACG AAGAGATCCG CGTCGACGAG
CTCGTCGACG GCCTGCTCGA TCCGAATGCT TCGGACTCCG CCGATACGGA CGGCTTCTCC
GCGAAGGAAG CGGAAGCCAT CGAGAACGAG GACGAGGAAG CCGAAGAGGA AGAGGAAGAA
GAGGAAGAGG AGGAAGACGA CGGTGCCGCG CAGGCATCGG CGAACGCCGC CCAGCTCGAA
GCCCTCAAGC GCGCATCGCT CGAGAAGTTC TCGCAGATCA GCGAGTGGTT CGACAAGATG
CGCCGCGCGT TCGAGAAGGA AGGCTACAAG TCGAAGGCCT ACCTGAAGGC GCAGGAAACG
ATCCAGAGCG AACTGATGAC GATCCGCTTC ACCGCGCGTA CCGTCGAACG CCTGTGCGAC
ACGCTGCGCG CGCAGGTGGA CGAAGTGCGT CAGGTCGAGC GTCAGATCCT GCACATCGTC
GTCGACAAGT GCGGCATGCC GCGCTCGGAA TTCATCGCGC GCTTCCCGGG CAGCGAGACG
GATCTCGACT GGGCCGAGAA GATCACCGCG GAAGGCCATC CGTACAGCGC GGTGCTGTCG
CGTAACGTCC CGGCGATCCG CGAACAGCAG CAGCGCCTGC TCGACCTGCA GGCGCGCGTC
GTGCTGCCGC TGAAGGACCT GAAGGAAACC AACCGCCAGA TGGCGGCCGG CGAACTGAAG
GCGCGTCAGG CGAAGCGCGA AATGACCGAG GCCAACCTGC GTCTCGTGAT CTCGATCGCG
AAGAAGTACA CGAACCGCGG CCTGCAGTTC CTCGACCTGA TCCAGGAAGG CAACATCGGC
CTGATGAAGG CGGTGGACAA GTTCGAATAC CGTCGCGGCT ACAAGTTCTC GACCTATGCG
ACGTGGTGGA TCCGTCAGGC CATCACGCGT TCGATCGCCG ACCAGGCGCG CACGATCCGT
ATTCCGGTTC ACATGATCGA AACGATCAAC AAGATGAACC GCATCTCGCG GCAGATCCTG
CAGGAAACCG GTCTCGAGCC GGACCCGGCA ACGCTCGCCG AGAAGATGGA GATGCCGGAA
GACAAGATCC GCAAGATCAT GAAGATCGCG AAGGAGCCGA TCTCGATGGA AACGCCGATC
GGTGACGACG ACGATTCCCA TCTCGGCGAC TTCATCGAGG ACACCAACAC GGTCGCGCCG
GCGGATGCCG CGCTGCATGC CAGCATGCGC GACGTCGTGA AGGACGTGCT CGATTCGCTG
ACGCCGCGCG AGGCGAAGGT GCTGCGGATG CGTTTCGGTA TCGAGATGAG CACCGATCAC
ACGCTCGAGG AAGTCGGCAA GCAGTTCGAC GTCACGCGCG AGCGGATCCG TCAGATCGAG
GCCAAGGCGC TGCGCAAGCT GCGTCACCCG AGCCGTTCCG ACAAGCTGAA GTCGTTCCTC
GAAGGGAACT GA
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| Protein sequence | MTKKLNEVSV EDDANQSDEQ PAAAAAPGKS KVRDRRAKEK ALLKEAFATS TPGTAEELEE
RRVKLRALIK LGKERGFLTY AEINDHLPDN FTETEALEGI IGTFNDMGVA VYEQAPDAET
LLLNDNAPAA SSDDEVEEEA EVALSTVDSE FGRTTDPVRM YMREMGTVEL LTREGEIEIA
KRIEDGLRHM VMAISACPTT IADILAMAER VANEEIRVDE LVDGLLDPNA SDSADTDGFS
AKEAEAIENE DEEAEEEEEE EEEEEDDGAA QASANAAQLE ALKRASLEKF SQISEWFDKM
RRAFEKEGYK SKAYLKAQET IQSELMTIRF TARTVERLCD TLRAQVDEVR QVERQILHIV
VDKCGMPRSE FIARFPGSET DLDWAEKITA EGHPYSAVLS RNVPAIREQQ QRLLDLQARV
VLPLKDLKET NRQMAAGELK ARQAKREMTE ANLRLVISIA KKYTNRGLQF LDLIQEGNIG
LMKAVDKFEY RRGYKFSTYA TWWIRQAITR SIADQARTIR IPVHMIETIN KMNRISRQIL
QETGLEPDPA TLAEKMEMPE DKIRKIMKIA KEPISMETPI GDDDDSHLGD FIEDTNTVAP
ADAALHASMR DVVKDVLDSL TPREAKVLRM RFGIEMSTDH TLEEVGKQFD VTRERIRQIE
AKALRKLRHP SRSDKLKSFL EGN
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