| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcenmc03_3609 |
|---|
| Symbol | |
|---|
| ID | 6126443 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia cenocepacia MC0-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010515 |
|---|
| Strand | - |
|---|
| Start bp | 496893 |
|---|
| End bp | 498005 |
|---|
| Gene Length | 1113 bp |
|---|
| Protein Length | 370 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 641650716 |
|---|
| Product | spermidine/putrescine ABC transporter ATPase subunit |
|---|
| Protein accession | YP_001777251 |
|---|
| Protein GI | 170735991 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG3842] ABC-type spermidine/putrescine transport systems, ATPase components |
|---|
| TIGRFAM ID | [TIGR01187] spermidine/putrescine ABC transporter ATP-binding subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.00717179 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGTCCG ATGATGTGAT CGTCAGCTTT CGCGGCGTGC GGAAGACCTA CGACGGCGAG
ACGCTGGTCG TCAAATCGCT CGACCTCGAC ATCCAGCGCG GGGAATTCCT GACGCTGCTC
GGGCCGTCCG GCTCGGGCAA GACCACCTGC CTGATGATGC TGGCCGGCTT CGAATTCCCG
ACCGGCGGCG AAATCCGCCT CGACGGCGAG TTGCTGAACA GCGTGCCGCC GCACAAGCGC
AACATCGGCA TGGTGTTCCA GAACTACGCG CTGTTTCCGC ACCTGACGGT CGAGCAGAAC
GTCGGGTATC CGCTGACGGT GCGCAAGCTG CCCGCCGCCG AGCGCGCGGA GCGCGTCGCG
CACGCGCTGA AGATGGTGCA GATGGAGCGC TTCGCGAAAC GCTATCCGGC GCAACTGTCG
GGCGGCCAGC AGCAGCGCAT CGCGCTGGCC CGTGCGCTCG TGTTCGAGCC GAAGCTGGTG
CTGATGGACG AGCCGCTCGG CGCGCTCGAC AAGCAGTTGC GCGAACACAT GCAGTACGAA
CTGAAGGCGC TGCACGAGAA GCTCGGCGTG ACCTTCGTGT ACGTGACGCA CGATCAGGGC
GAGGCGCTGA CGATGTCCGA TCGCGTCGCC GTGTTCGACA AGGGCATCGT GCAGCAGCTC
GACACCGTCG ACCGCCTGTA CGAATCGCCG TGCAACGAAT TCGTCGCGAA CTTCATCGGC
GACAGCAACC GGCTGCGCGG CACCATCGCA CGCGTCGACG GCGAATTCTG CGAATTCCGG
CTCGACGACG GCACGAAGCT CGTCGGCCGC CATATCGGCG AAGCCGCCGA GGGCGCATCG
GCCGTCGCGT GCATCCGCCC GGAGCGCATG AGTCTCGCCG CGCACGGCGT GAACGGTGCG
AACGGTGCGA ACGGCGCCGC CGCCAATTGC GTGAGCGGCG AGGCGCGCAG CCTCATCTAT
TTCGGCGATC ACGTGCGCAT GCGCTGCGCA CTGCCGGGCC AGGACGAATG TTTCGTGAAG
GTGCCGCTCG GCACCGGCGC GCTCGACGCG TTCTCGCCCG GCGCCCCGGT CTCGCTTGCG
TTCTCGCCCG AACACCTGCG CGTGTTCGCG TGA
|
|---|
| Protein sequence | MKSDDVIVSF RGVRKTYDGE TLVVKSLDLD IQRGEFLTLL GPSGSGKTTC LMMLAGFEFP
TGGEIRLDGE LLNSVPPHKR NIGMVFQNYA LFPHLTVEQN VGYPLTVRKL PAAERAERVA
HALKMVQMER FAKRYPAQLS GGQQQRIALA RALVFEPKLV LMDEPLGALD KQLREHMQYE
LKALHEKLGV TFVYVTHDQG EALTMSDRVA VFDKGIVQQL DTVDRLYESP CNEFVANFIG
DSNRLRGTIA RVDGEFCEFR LDDGTKLVGR HIGEAAEGAS AVACIRPERM SLAAHGVNGA
NGANGAAANC VSGEARSLIY FGDHVRMRCA LPGQDECFVK VPLGTGALDA FSPGAPVSLA
FSPEHLRVFA
|
|---|
| |