Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bcenmc03_3359 |
Symbol | |
ID | 6126094 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia cenocepacia MC0-3 |
Kingdom | Bacteria |
Replicon accession | NC_010515 |
Strand | + |
Start bp | 210482 |
End bp | 211666 |
Gene Length | 1185 bp |
Protein Length | 394 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 641650469 |
Product | porin |
Protein accession | YP_001777004 |
Protein GI | 170735744 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3203] Outer membrane protein (porin) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.00120299 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 33 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAGCAC CCGTCAACCG TTATGCAATC CTGATTTTAT CGGCCGCGTC GCTCGGCACG ACCGCCCATG CGCAGAGCAG CGTCACGCTG TACGGCGTGG TCGACGATTC GCTCGCGTAC GTGAACAACC AGCAGGGACA CTCGAACATC TACATGCGCG ACGGCAACCT GTATGCGTCG AAGTTCGGGC TGCGCGGCGA CGAGGATCTC GGCGGCGGCA CGCACGCGAT CTTCGACCTG CAGGCCGGTT TCAACCTGAA TACGGGCGCG CAGGCCGCCG CCGGCACGAT GTTCAATCGC CAGGCCTTCG TCGGCCTGCG CAACGCCAGC TACGGTACGG TCACGGCCGG TCGCCAGTAC ACGCCCTACT TCCTGTTCGT CGGCCCGTAC GCGTCGAGCA GCTGGCTGAC GGGCGCCACC GGCGCGCATC CGGGCGACAT CGACGGCCTC GACACCACGA TCCGCGTGAA CAATTCGGTT ACCTATACGT CGCCGACCTT CGCGGGGCTG ACCGCGAGCG CGATGTACGC ATTCGGCGGC ATTGCCGGCG CGACCGGCAA GGGCAACACG TTCAGCGCCG CGCTGCGCTA CGCGAACGGG CCGATCGGGA TCGCGGCCGG CTACCTGCGG ATCAACAGCT CGGGCTCGTC CGCGGGCTTC CTGAACCCGG CCACCGCGTC GTCGGGCAGC TTCGCGGTGT CCGTGCTGAA CCAGGGCTAC CTGAGCGCGA AAGCGGTCGA ACAGGTGGCG GCGGCCGGCA ACTACACGCT CGGCGACCTG ACGATGGGGC TCAACTATTC GAACGTGAAG TACCTGCCCG GCAACGGCTC GGCGTTCACC GACACGGCCG TGTTCAACAC CTACGGCGCG CTTGCCGCAT ACCGCTTCAC GCCGACGTTC TCGGTGGCCG GCGCATTCGC GTACACGCTC GCATCGAAGG CGAACGGCAT CGCGAGCGCG GCCCGCTATC AACAATATTC GCTGAAGGAG TCGTACAGCC TGTCGAAACG CACGACGCTC TATGCGCTGC AGGCGTACAC CCATTCGAGC GGCCGGACGC TCGGCGCGCA AGGCGCCGGG CACATCGTCG ATGCGGCGCC GATCGTCGGC GATTCGCAGC AGCTCACGCC GTCGACGACG CACGGCCAGT TCGTCGGCAT GGCCGGGATC GCCGTCACGT TCTGA
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Protein sequence | MKAPVNRYAI LILSAASLGT TAHAQSSVTL YGVVDDSLAY VNNQQGHSNI YMRDGNLYAS KFGLRGDEDL GGGTHAIFDL QAGFNLNTGA QAAAGTMFNR QAFVGLRNAS YGTVTAGRQY TPYFLFVGPY ASSSWLTGAT GAHPGDIDGL DTTIRVNNSV TYTSPTFAGL TASAMYAFGG IAGATGKGNT FSAALRYANG PIGIAAGYLR INSSGSSAGF LNPATASSGS FAVSVLNQGY LSAKAVEQVA AAGNYTLGDL TMGLNYSNVK YLPGNGSAFT DTAVFNTYGA LAAYRFTPTF SVAGAFAYTL ASKANGIASA ARYQQYSLKE SYSLSKRTTL YALQAYTHSS GRTLGAQGAG HIVDAAPIVG DSQQLTPSTT HGQFVGMAGI AVTF
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