| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Xfasm12_2312 |
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| Symbol | trmE |
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| ID | 6120080 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Xylella fastidiosa M12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010513 |
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| Strand | - |
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| Start bp | 2468440 |
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| End bp | 2469795 |
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| Gene Length | 1356 bp |
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| Protein Length | 451 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 641650248 |
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| Product | tRNA modification GTPase TrmE |
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| Protein accession | YP_001776784 |
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| Protein GI | 170731351 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0486] Predicted GTPase |
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| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00450] tRNA modification GTPase TrmE |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.00480658 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAGCCAGC GCTCAACCAA GATGGGCGAC ACCATTGCTG CCATTGCGAC TGCCTCTGGT
GCTGCTGGAA TAGGGATCAT TCGTATTTCT GGCTCACAGA TTAAGACAAT TGCAACTGGT
CTAGGAATGA CCACCTTACG GCCACGATAT GCGCATTACA CCCGTTTTCT TGATGTCGAT
GATCAAGTCA TTGATGACGG ATTAGCAATA TGGTTTCCTG CTCCGCATAG TTTCACTGGC
GAAGATGTAC TAGAACTGCA AGGCCACGGT AGCCCACTGT TGCTACGCCA ACTACTGACA
CGATGCCTGG ATCTGGGAGC GCGCCAAGCA CGCCCTGGTG AATTTAGCGA ACGTGCCTTT
CTCAACGGAA AACTCGATTT GATACAAGCA GAAGCAATTG CCGATATGAT CGGCGCTGCT
GACCTGCGTG CTGCCCGTGC TGCTCGTAGA TCGTTGGATG GCGTGTTTTC CCGGCGTTGC
GAAGCATTAG CCCAACAATT AGTCAGATTA CGTATTCACG TTGAGGCAAC AATCGACTTT
GCCGATGAAT CATTGGATAC CCTAGACCGT GCCCAGATAC GTACTTCTTT ACAAACCTTG
AATGTTGAAT TGACCCAATT ACTTCGAGAT GCTGAGCATG GCAAGCGCCT TTGTGATGGA
CTGTATACCG TTTTAGTTGG TCCACCGAAT GTTGGTAAAA GCTCACTACT CAATGCCTTA
ATTGGTAGTG ACCGTGCGAT CGTCACCGAT GTTCCTGGTA CCACTCGTGA CACATTACGA
GAGAGCGTAC ATTTCCATGG CTTGGAATTT GTTTTAGTTG ACACTGCTGG CTTACGTGAA
GAAGGCGATG CAATTGAGCG TGAAGGCATG CGTCGTACCC TCAATGAATT ACAACGCGCT
GATTTAGCAT TGGTCGTCTT AGATGCCTGC GATCCCCAGA TTGGCAGCCT TGCCCTTGCA
GATGCCCTTA CTTCAGTGCC ACGCGTCCTC TGGATTCATA ACAAACTTGA TTTACTTACC
GAGCCACCGT CCGCATTGGA TACAGATGTG ATCCCGGTGT CTGCAATGAC AGGTGCTGGC
TTGGACACAT TGAAAACCCG CTTGCGCACA TTGCTGCTTG GCGAGACAGT CGAAACAATC
GAAGGTGAAT TTTCGGCACG ATTACGTCAT GTACAAGCCT TACAACGTAC AGCGGCCCAT
GTAACCGATG CTAATGCACA ATTCGCCTAT GAACATTTGG AATTGACAGC TGAAGAACTT
CGTTTGGCTT ATAAAGCACT GGGTGAAATC AATGGCAGCA TGAGCCCCGA TGAATTACTC
GGCCGGATTT TCTCAAACTT CTGTATTGGA AAATAA
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| Protein sequence | MSQRSTKMGD TIAAIATASG AAGIGIIRIS GSQIKTIATG LGMTTLRPRY AHYTRFLDVD
DQVIDDGLAI WFPAPHSFTG EDVLELQGHG SPLLLRQLLT RCLDLGARQA RPGEFSERAF
LNGKLDLIQA EAIADMIGAA DLRAARAARR SLDGVFSRRC EALAQQLVRL RIHVEATIDF
ADESLDTLDR AQIRTSLQTL NVELTQLLRD AEHGKRLCDG LYTVLVGPPN VGKSSLLNAL
IGSDRAIVTD VPGTTRDTLR ESVHFHGLEF VLVDTAGLRE EGDAIEREGM RRTLNELQRA
DLALVVLDAC DPQIGSLALA DALTSVPRVL WIHNKLDLLT EPPSALDTDV IPVSAMTGAG
LDTLKTRLRT LLLGETVETI EGEFSARLRH VQALQRTAAH VTDANAQFAY EHLELTAEEL
RLAYKALGEI NGSMSPDELL GRIFSNFCIG K
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