| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Xfasm12_2283 |
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| Symbol | |
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| ID | 6120047 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Xylella fastidiosa M12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010513 |
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| Strand | - |
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| Start bp | 2427594 |
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| End bp | 2430728 |
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| Gene Length | 3135 bp |
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| Protein Length | 1044 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 641650220 |
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| Product | Type I site-specific deoxyribonuclease |
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| Protein accession | YP_001776760 |
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| Protein GI | 170731327 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0610] Type I site-specific restriction-modification system, R (restriction) subunit and related helicases |
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| TIGRFAM ID | [TIGR00348] type I site-specific deoxyribonuclease, HsdR family
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCATTTT TATCAGAAGC CACCTTGGAA CAAGCCGTGC TGGATCAGCT ACGCCTATTG
GGCTACAGCA TCGAGCGTGA AGAAAACATC GGCCCTGATG GCTATCGTCC GGAACGCGCC
AGTTATGACC AGGTTGTACT CAAACAACGC TTCGTTGATG CCGTTACACG TCTCAACCCA
GGGCTGCCGC CAGAGGCCAG ACAGGATGCA ATCCGTAAGG TCACACAGTC TGAGTTGCCA
TCATTACTCG AAGAAAACCG CCGCATCCAC AGACTGATCA CCGAAGGTGT CGATGTCGAA
TACTATGCCC AGGACGGTAC CCTGACAGCG GGCAACGTTG CACTCATCGA CTTCGACCAC
CCCCAACAGA ACGATTGGTT GGCCGTGAAC CAGTTCGTGG TTATTGCTGA TCACTACAAC
CGGCGTCCTG ACGTGGTCCT CTTCTTGAAC GGCTTGCCAT TGGCCGTGAT CGAATTGAAG
GCACCAGGAA GTATCAATGC AACCTTGATT GCAGCCTTCA ATCAGTTGCA GACCTATAAA
GAGCAGATCC CGGCACTGTT CAACACCAAT GCCCTGCTAG TGACTTCTGA CGGGATGACG
GCCCGCTTCG GCTCGCTGTC GGCCGACTTA GAACGCTTCA TGCCTTGGCG CACCACCGAC
GGCACCGACA TTGCTCCAAA GGGGGTGCCG GAACTTGCAA CACTGATTGA GGGGATATTC
GAGCCGCATC GCCTGCTCGA CCTACTGCGC CATTTCACCG TTTTCCGGAA GACGGATGCT
GGCTTGGCGA AGATCATCGC CGGTTACCAC CAATTCCACG CTGTACGGCA GGCCATCAAT
AGCACCGTGG CTGCTTCCTC GCCCCAGGGG AATCAACAGA TTGGTGTCAT CTGGCACACC
CAAGGTTCCG GAAAAAGCCT ACTGATGGCT TTCTATGCTG GACAACTGGT CAAACACCCC
GCAATGGCCA ACCCAACGCT TGTTGTACTC ACAGATCGTA ACGATCTTGA CGATCAGTTA
TTCACCACAT TCTCACAGTG CGGTGATTTA ATCCGGCAAA CCCCGGTACA GGCCCAGAGC
CGCGACCAGG TGCGGAAACT CTTGAACCGT GCATCCGGCG GAGTGATTTT TACCACCTTG
CAGAAATTCG GTGACATCAC AGAACCACTG ACCACACGAC GTAACGTCGT CGTCATCGCT
GATGAAGCAC ACCGCAGCCA ATATGGCTTC AAAGCCAAAG TGGACAACAA AACCGGCAAA
ATCTCCTATG GCTTCGCTAA GTACATGCGT GATGCCCTGC CCAACGCATC TTGCATCGGT
TTTACCGGCA CACCGATTGA GGCCGACGAC GTCAATACCC CAGCCGTATT CGGCAACTAC
ATCGACATCT ACGACATCAG CCGTGCGGTC GAAGATGGTG CGACCGTGCC GATCTACTAC
GAATCGCGGC TGGCACGTAT TGCACTGGAT GAAGCCGAGA AACCGCAGAT TGATGCTGAA
GTCAACGCAC TGACCGAAGC CGATTCCGAG GCCGAGCAAG AGCGCTTCAA GAAAAAATGG
TCAACGGTCG AAACCTTAGT CGGCAGTGAT AAACGGCTTG CTTTAATCGC CAAGGACATC
ATCACCCATT GTGAAGATCG CCTAGCCGCT CTGGATGGGA AGGCGATGGT GGTCTGTATG
AGCCGTCGTA TCTGTGTCGC CCTATACGAT CACATCGTGA CACTGCGGCC CGATTGGCAC
AGCACCGATA ACAAGGCCGG ATCGCTCAAA ATCGTCATGA CCGGCACGGC CAGTGATCCG
CAGCAGTGGC GACAGCATAT CGGCAACAAA GCCCGGCGTG ATCTGCTGGC CGAACGTGCC
CGTGACCCCA AAGACCCACT CAAACTAGTG ATTGTCCGGG ATATGTGGCT CACTGGTTTT
GACGCCCCCT GCATGCACAC CATGTACCTT GACAAGCCGA TGCAAGGGCA TGGATTGATG
CAGGCCATTG CACGGGTGAA CCGCGTGTTC CGCGACAAAC CCGCCGGATT GATCGTGGAC
TACATCGGCA TCGCACAAAA TCTCAGAACG GCCCTGCAAC AGTATTCGAA GAACGATCAG
CAACACACCG GTGTTGATGA AGCACAGGCC ATTGCAGTCA TGATGGAGAA ATACCAGATC
GTCCGGGATA TGTACCACGG CTACGATTAC CTCACCGCAA TGAGTGGTAC CCCACAAGAG
CGCCTTGCCA TGATGGGGGG AGCCATTGAG TGGATACTCA ATCTTCAGCA GCAACTGGCA
GCCACAGCAC AGACCAAAGA AGGCAAAAAA GAGGCCCACC GCCGCTATCA AGATGCTGTG
TTAGCGTTGT CTAAGGCGTT CGCCCTGGCA TCGGCCTCCG ATGAGGCCCG CCACATCCGT
GAAGAAGTCG GCTTCTTCCA GGCGATCCGT GCCGCCCTCG TCAAGAGCGC CGATCATTCC
GGGGGTAGCG AACCGCAACG CGACCTGGCC ATCCAGCAGA TCGTGAGCCG AGCCGTCGTC
TCGACGGAGA TCGTCGATAT CCTGGCTGCT TCTGGAATCA ACAGCCCAGA TATTTCCATC
CTGTCCGACG CATTTCTGGC TGAAATTCAG CAGATGCAAC GAAAACACCT CGCCTTGGAA
GCCTTGCGCA AGCTGTTGAA CGACCGCATT CGTTCCCGCA GCACCGCTAA CCTCGTGCAG
ACCAAGGCCT TCTCCGAGCG CCTGGAAGGT GCTGTGGCGC GCTACCACGC CAACGCGATC
ACCACTGCCC AGGTGCTCCA GGAACTGATC CAATTGGCCA AAGACATCCG TGCTGCTCGC
CAGCGCGGCG AAGCCACCGG ATTGTCTGAT GAAGAGGTTG CCTTCTACGA CGCACTGGCC
GAAAACGAAA GCGCTGTACA GATGATGGGA GATCACACAC TCCGGCTGAT CGCTCACGAA
TTACTCATGC GCCTGCGCGA AAACGTCTCA GTGGATTGGG CCCATCGTGA CTCCGCCCGT
GCCCGGATGC GTGTCCTAGT GAAGCGCATC CTGCGCAAGT ACGGCTACCC GCCTGATCTA
CAGAACACGG CTGTGCAGAC CGTCCTCCAG CAGGCCGAAG CCTTCTCGTC CCAGTGGAGT
GATTCTGGAC CCTAA
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| Protein sequence | MAFLSEATLE QAVLDQLRLL GYSIEREENI GPDGYRPERA SYDQVVLKQR FVDAVTRLNP
GLPPEARQDA IRKVTQSELP SLLEENRRIH RLITEGVDVE YYAQDGTLTA GNVALIDFDH
PQQNDWLAVN QFVVIADHYN RRPDVVLFLN GLPLAVIELK APGSINATLI AAFNQLQTYK
EQIPALFNTN ALLVTSDGMT ARFGSLSADL ERFMPWRTTD GTDIAPKGVP ELATLIEGIF
EPHRLLDLLR HFTVFRKTDA GLAKIIAGYH QFHAVRQAIN STVAASSPQG NQQIGVIWHT
QGSGKSLLMA FYAGQLVKHP AMANPTLVVL TDRNDLDDQL FTTFSQCGDL IRQTPVQAQS
RDQVRKLLNR ASGGVIFTTL QKFGDITEPL TTRRNVVVIA DEAHRSQYGF KAKVDNKTGK
ISYGFAKYMR DALPNASCIG FTGTPIEADD VNTPAVFGNY IDIYDISRAV EDGATVPIYY
ESRLARIALD EAEKPQIDAE VNALTEADSE AEQERFKKKW STVETLVGSD KRLALIAKDI
ITHCEDRLAA LDGKAMVVCM SRRICVALYD HIVTLRPDWH STDNKAGSLK IVMTGTASDP
QQWRQHIGNK ARRDLLAERA RDPKDPLKLV IVRDMWLTGF DAPCMHTMYL DKPMQGHGLM
QAIARVNRVF RDKPAGLIVD YIGIAQNLRT ALQQYSKNDQ QHTGVDEAQA IAVMMEKYQI
VRDMYHGYDY LTAMSGTPQE RLAMMGGAIE WILNLQQQLA ATAQTKEGKK EAHRRYQDAV
LALSKAFALA SASDEARHIR EEVGFFQAIR AALVKSADHS GGSEPQRDLA IQQIVSRAVV
STEIVDILAA SGINSPDISI LSDAFLAEIQ QMQRKHLALE ALRKLLNDRI RSRSTANLVQ
TKAFSERLEG AVARYHANAI TTAQVLQELI QLAKDIRAAR QRGEATGLSD EEVAFYDALA
ENESAVQMMG DHTLRLIAHE LLMRLRENVS VDWAHRDSAR ARMRVLVKRI LRKYGYPPDL
QNTAVQTVLQ QAEAFSSQWS DSGP
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