| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Xfasm12_2176 |
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| Symbol | |
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| ID | 6120147 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Xylella fastidiosa M12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010513 |
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| Strand | + |
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| Start bp | 2285120 |
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| End bp | 2288518 |
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| Gene Length | 3399 bp |
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| Protein Length | 1132 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 641650114 |
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| Product | ribonuclease E |
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| Protein accession | YP_001776659 |
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| Protein GI | 170731226 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1530] Ribonucleases G and E |
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| TIGRFAM ID | [TIGR00757] ribonuclease, Rne/Rng family |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGCGAA TGTTAATCAA TGCTACACAG GCTGAAGAGC TTCGCGTAGC AATCGTGGAT
GGCCAGAGCC TGTACGACAT CGATATTGAG CAACCATCTA AAGAGCAAAA AAAATCCAAC
ATCTATAAAG GCCGTATCAC CCGGCTGGAA CCGTCTCTCG AAGCCGCGTT TGTTGATTAC
GGCACAGATC GCCACGGCTT TTTGCCGTTA AAAGAAATCT CCAAAGACTA CTTCCAAGCC
AGTCTGGACC ATCACAAAGC TGGTATCCGA GAGTTATTAC GCGAGGGTCA AGAGATTGTC
GTTCAGGTTG ATAAAGAAGA ACGTGGCAAC AAAGGAGCCG CCCTGACCAC GTTCATTTCA
CTGGCCGGTC GCTACATGGT GTTGATGCCA AACTCGCCAT CAGCAGGCGG AGTCTCACGT
CGCATTGAAG GCGAAGATCG CGCTGCGCTG AAAGAAGCAC TGGAAAAACT GAACATTCCC
AACGATATGG GAGTGATCAT CCGCACTGCT GGCGTGGGCC GTGACACTCA AGAGCTACAA
TGGGATCTGG ATTTTTTACT GCACGCTTGG CGCGCCATTG CCGAAGCTGC ATTGAGCAAG
CCTGCTCCAT TGCTCATCTA CCAAGAATCG CGCCTCATCA TCCGCGCCCT ACGCGACTAT
TTCCGTGCTG ACATCGGCGA AATTTTAGTC GACACAGAGG AAATGTATCA GGACGCCCAC
GAATTTATGC GGCACGTGAT GCCGCAAAGC CTTCGCAAGC TCAAATACTA CAAAGACGAC
ATCCCTCTGT TCAATCGCTT CCAGATCGAA TCGCAGATCG AAGGTGCCTA CGAACGTAAC
GTACGCCTCC CCTCCGGCGG CTCCATTGTG GTTGATCAAA CAGAAGCGCT CACTGCCATT
GATGTCAACT CTTCACGAGC TACAAAGGGT AACGACATTG AGGAAACCGC ATTCCAAACC
AACCTGGAAG CAGCCGATGA AATCGCACGC CAACTGCGCC TACGCGATGT AGGTGGGTTA
GTAGTGATTG ACTTCATTGA TATGTCCTCT TCAAAACACC AACGTGAGAT CGAAACCCGT
CTACAAAACT GTCTCAAATA CGACCGTGCA CGCGTGCAGC TTAGCCGCAT CTCGCGCTTC
GGCCTGTTGG AGATGAGTCG TCAACGCCTA CGCCCAAGCC TCGGCGAATC CAGCCAAATC
GTTTGCCCAT ACTGCGACGG ACACGGGCGG ATGCGCAGCA TCGAATCGCT ATCACTGTCG
ATCATCCGTA TAGTCGAAGA ACACGCGATG AAGGAAAACA CTGGACAGGT GCTTGTCCAG
ACACCAGTAG AGATAGCCAA CTACCTGCTC AACGAGAAGC GCCGTGCAAT TAATGAGATC
GAGAAACGCC ATGACGCACC GATCATCATC ATCGCTGACG AGCAATTACA TGCCCCGCAC
TACGAGGTGA CTCGTCTACG TGAGAACGAA TTAAGCGAGG AAACAGGCAA ACCAAGTTAC
CAACGCAACA CCCCACGCAA GCTACCGGTA CATGCACTCA CCAAATCGCA ACTTAACATC
CCGCCAGCAC CAGCAGTGAA ATCGATCACC CCACCGCAAC TGGCACCAAC TCAAGAAAAG
ATACCAACAA TCCGAGAGCA ATCCGCTGAG AACCGAGCAC ACCCTATTCC GGAACTTGTA
TCCAGCCTAG CGAGTTGGCT AAAACGTATC TTTGGAAATA CTGACAAGCG ACAGACCGCA
AGTAACAGCT CGCATCCTGC CCCCCTGCAA CAGAACCGCA ATGGCAATGT GCAACGCAAC
GAACGCAACC GCCGTGATGG CCGAATCGCT ACTAGCAACA CCCAACCACA GCAGCAAAGC
AGCAGCCACC GCGACAATTA TCGCCATAAC GAAAGCAACA ACTATCCGCA AATCCAGAAC
CAATGCACAG CAGACACAAA CGGGAAATTG CGGAACGAAT CACAAACACC CAAATCGTCA
GCATATGTGT CGAAACTACC CCAGATGCCA AGGCAACCCC AACCACAGCT CCCAAAAACA
CCAAGGACGC AATCGCAACC GACACAAAAC AGCACGAAAA CGATATTAGA CAAACAGCCT
GGACCTGTAC TCTATGGTGA AGACAACACG CTACAGAAAG CAAAACCGAT CCCGTTAACT
GCGGAAGCGG TGCTTACTAA CATCCCTGCG CCTAGCATGA CAGACAAACC GTCAGGTAAA
GACCAGAATG CTTTACCAAC AACATCGAAC GTGACTCAAG ACACATCAAA CGCGCTGATC
GAAGCCAAAT CAACCACAAA GACGAACATT GATACGAATA CTGACATTGA ACCGCAACAA
AACAATCATG AAGGTACTGC GAACAACGAC GGCAGCAACC GGCGGCGTCG TGGTCGTCGT
GGTGGTCGTC GTCGTCGTCG GAATACTTCT CTCAGTAACG AAACCAATGC TGTAAGCGAA
AGCAATAGCA TCAAACTATC CAACGACACT GAAACCGACA ATGCGGACAA TATCGAATCA
CCCCAAGCCT TGCGCCCTGC CATGCAGGAA AACAAGCGCC AACCGGAGTT TGAGTTCGAT
GACCTAGCAC CCGCAGCTCC GATCACCGCA CCGTTACGTA AGGCAATAGC TGCTGAGAGA
GAGGGGATAT CCGCTGATCT CACAACTACA GCGCCTCAGA GCATAATGGA AACCGCGTCC
CGAACGCATA TCGCCTCGCA AATGGCTCCC CAAAGTGAAA CCAGTGCTGC GTCAACCACG
TCTCATACCT CTGTACAAGC TACTGCGACT CATACGCATA AAGATGTCGT TTCTGATTCC
CCGTCAAGAA CACCTTACAA GGCTCACTCC AACACCACCA GACACAGTTC GGGGCGTCGT
CTGGAAACTC TCTCTACGGC ACATCCCCCT GCCAAGGCAC CTCCATCAGA GCATATAACA
CCAACATCAC GCTCAAACGC GAATGCTAAA ACCACAAAGA CAGAGATACC AAACAAACAA
ACCAACGCGA ACAGCGATAC GGCAACTCGC CCAACAGCCA CTGATGTGCT GGTTGTAACA
AATCAACCAG TGATAGCAAC CAAGCCTTCA ACAACGATAG AAAAAGCACA AACCAAAGTT
ATTCCCTCCA CCACATACAA TAATGAACAC ATCGAAACGA AGCGAAAGAT CATTGCAACG
GAATCCGAAA CAACCCAACC ACCAGTACGA AAGCCACGCT TGCCGATGCA AAATCCACTA
CCCAAGGTAG TCGCTCCACT AGAAGACAAG AAGCAAGCCC CATTCGTGGA AAATACAACC
CAACGTAATA TTAATAACGC GACCACAACA TCGCAGAACG ACAAATCATT AGATTTTACA
AAAAACAACG AAGAAAATAG TGACAACAAT ACACTATGA
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| Protein sequence | MKRMLINATQ AEELRVAIVD GQSLYDIDIE QPSKEQKKSN IYKGRITRLE PSLEAAFVDY
GTDRHGFLPL KEISKDYFQA SLDHHKAGIR ELLREGQEIV VQVDKEERGN KGAALTTFIS
LAGRYMVLMP NSPSAGGVSR RIEGEDRAAL KEALEKLNIP NDMGVIIRTA GVGRDTQELQ
WDLDFLLHAW RAIAEAALSK PAPLLIYQES RLIIRALRDY FRADIGEILV DTEEMYQDAH
EFMRHVMPQS LRKLKYYKDD IPLFNRFQIE SQIEGAYERN VRLPSGGSIV VDQTEALTAI
DVNSSRATKG NDIEETAFQT NLEAADEIAR QLRLRDVGGL VVIDFIDMSS SKHQREIETR
LQNCLKYDRA RVQLSRISRF GLLEMSRQRL RPSLGESSQI VCPYCDGHGR MRSIESLSLS
IIRIVEEHAM KENTGQVLVQ TPVEIANYLL NEKRRAINEI EKRHDAPIII IADEQLHAPH
YEVTRLRENE LSEETGKPSY QRNTPRKLPV HALTKSQLNI PPAPAVKSIT PPQLAPTQEK
IPTIREQSAE NRAHPIPELV SSLASWLKRI FGNTDKRQTA SNSSHPAPLQ QNRNGNVQRN
ERNRRDGRIA TSNTQPQQQS SSHRDNYRHN ESNNYPQIQN QCTADTNGKL RNESQTPKSS
AYVSKLPQMP RQPQPQLPKT PRTQSQPTQN STKTILDKQP GPVLYGEDNT LQKAKPIPLT
AEAVLTNIPA PSMTDKPSGK DQNALPTTSN VTQDTSNALI EAKSTTKTNI DTNTDIEPQQ
NNHEGTANND GSNRRRRGRR GGRRRRRNTS LSNETNAVSE SNSIKLSNDT ETDNADNIES
PQALRPAMQE NKRQPEFEFD DLAPAAPITA PLRKAIAAER EGISADLTTT APQSIMETAS
RTHIASQMAP QSETSAASTT SHTSVQATAT HTHKDVVSDS PSRTPYKAHS NTTRHSSGRR
LETLSTAHPP AKAPPSEHIT PTSRSNANAK TTKTEIPNKQ TNANSDTATR PTATDVLVVT
NQPVIATKPS TTIEKAQTKV IPSTTYNNEH IETKRKIIAT ESETTQPPVR KPRLPMQNPL
PKVVAPLEDK KQAPFVENTT QRNINNATTT SQNDKSLDFT KNNEENSDNN TL
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