| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Xfasm12_2123 |
|---|
| Symbol | |
|---|
| ID | 6120093 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xylella fastidiosa M12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010513 |
|---|
| Strand | - |
|---|
| Start bp | 2227598 |
|---|
| End bp | 2230279 |
|---|
| Gene Length | 2682 bp |
|---|
| Protein Length | 893 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 641650064 |
|---|
| Product | DNA gyrase subunit A |
|---|
| Protein accession | YP_001776610 |
|---|
| Protein GI | 170731177 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0188] Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit |
|---|
| TIGRFAM ID | [TIGR01063] DNA gyrase, A subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.155054 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCAGAGA CCGCCAAGGA AATCATCAAG GTCAATCTGG AAGACGAGAT GCGTAAGAGC
TACCTCGATT ATGCGATGAG CGTAATCGTA GGTCGTGCAC TCCCCGATGC TCGCGATGGC
ATGAAGCCTG TGCATCGCCG CGTCCTGTAC GCCATGCATG AACTTGGTGC TCACAGCGAC
AAGTCCTACT TCAAATCTGC ACGTATCATC GGTGAAGTTC TCGGTAAGTA CCATCCGCAT
GGTGATCAGT CTGTTTACGA CACCCTGGTA CGTATGGCGC AACCCTTCTC TTTGCGTTAC
TTACTGGTAG AGGGCCAAGG TAACTTTGGT TCGGTGGACG GCGATCCTGC TGCTGCGATG
CGTTACACCG AGTCGCGCAT GTCGCGGATC AGCCACGACC TGATTGCTGA CATCGATAAA
GAGACCGTCG ACTTCCAGCC CAATTACGAC GAAAAAGAAA CGGAACCAAC GGTCATGCCG
ACCCGGTTCC CGAATCTATT GGTCAATGGA TCGTCCGGGA TTGCAGTGGG CATGGCCACC
AATATCCCGC CCCATAACCT CGTCGAATCC ATCAACGCTT GCATTGCCCT TATTGATAAT
CCAGAACTGG ATGTCGATGG ATTGATGGAA TACATCCCCG GTCCGGATTT CCCCACCGCC
GGCATCATCA ACGGCACCGC TGGCATTGTT GCTGGCTACC GTACCGGTCG TGGTCGCGTC
CGCATGCGTG CCAAGGCGGA TATTGAAGTG GCCGACAATG GCCGTGAAGC CATCGTTGTT
ACTGAGATTC CTTACCAAGT CAACAAAGCA CGTTTGATCG AAAAAATTGC CGAGCTGGTG
AAGGAAAAGA GAATCGATGG CATCAGCGAA CTGCGTGACG AGTCCGACAA GGACGGCATG
CGGATTTATA TTGAAGTCAA ACGTGGCGAG TCTGCCGAGG TTGTCCTCAA CAACCTCTAC
CAGCAGACCC AGATGGAGTC GGTATTCGGA ATTAACATGG TGGCACTGGT TGACGGCCGC
CCCCAACTAC TCAACCTCAA ACAGATACTG CAAGCCTTCA TCCGTCACCG CCGCGAAGTG
GTCACCCGCC GCACCATCTT CGAACTGCGC AAAGCCCGTG CCCGTGCCCA CGTCCTGGAA
GGTTTGACGG TTGCCCTGGC CAACATTGAC GAGATGATTC ACCTGATCAA AACCTCGCCA
AGCCCACAAG AAGCAAAAGA GCGCCTGCTC GCCAAAACCT GGGCACCTGG ATTGGTCGGC
ACATTGCTCA GTGCCTCAGG TGGTGAAGCA TCGCGCCCGG AAGATCTCCC GCAAGGCGTG
GGGCTGATTG GCGACTCCTA TCAACTGACC GAAGTCCAAG TACGACAGAT TTTGGAAATG
CGCCTGCACC GCCTCACCGG GCTGGAACAG GACAAGCTTG CCGAAGAGTA CCAGCAGCTG
CTAGAGATCA TTGTCGGCCT GATCCGCATC TTGGAGAACC CGGATGTCCT ATTACAGGTC
ATTCGTGATG AACTCCTCAA GATACGTGAA GAATATGGGG ATGTACGCCG TACCGAGATC
CGCCATAGCG AAGAAGACTT AGACATCCTC GACCTCATTG CACCAGAGGA TGTCGTCGTC
ACCCTGTCCC ACGCCGGCTA TGCCAAGCGT CAGCCCGTGT CCGCCTACCG TGCCCAAAAG
CGGGGAGGGC GTGGCCGTGC TGCTGTGACC ACAAAAGAAG AAGACTTCAT TGACCATCTC
TGGCTGGTCA ACACCCACGA CACCCTGTTG ACCTTCACCA GCACCGGCAA AGTATTTTGG
CTGTCGGTGT ACCAATTGCC AGAAGCCGGT TCCAATGCCC GCGGTCGCCC CATCATCAAC
TGGATCCCCT TGGAGCCAGG CGAAAAAGTG CAGGCCGTCC TTCCCGTACG CGAATACGCT
GAGAACCACT ATGTGTTTTT TGCCACCCGC CAAGGGACCG TCAAAAAGAC TCCCTTGAGT
GAATTTGCAT TCCGCTTAGC GCGCGGCAAA ATCGCGATCA ACCTTGATCA AGGAGATGCC
CTGATTGGTG TTGCCCTGAC CGATGGCGAA CGTGATGTCC TGCTCTTTGC CTCCAATGGC
AAGACCGTGC GTTTCAGTGA GAACACTGTC CGCTCAATGG GTCGCACCGC CACGGGCGTG
CGCGGTATCA AACTGACCGA AGGAGAAGAG GTGGTCAGCC TCATCATTGC CGAACCGGCA
ACTGGTGTGG ATATGCTCGA AGAAGCGGAA GAAACGGCAG ACGACGACAT CCAGACAGCC
AACACTGCCG ACAGCGTGCA CATTGATCCC ACCCAGGATG ACATCCTCTG CATCCTGACC
GCCACTGAAA ACGGCTACGG CAAATGCACC CCCCTGGCCC ATTACCCTCG TAAAGGCCGT
GGCACTCAAG GCGTCATTGG TATCCAGACC ACCGAGCGCA ATGGCCGCCT GGTTGCTGCC
GTCCTATTAG GTGCCACCGA CGAAGTCCTC TTGATCTCTG ATGGCGGCAC CCTGGTGCGT
ACCCGTGGCT CCGAGATTTC GCGCGTTGGC CGTAATACCC AAGGCGTCAC CCTAATCCGC
TTATCCAATG GTGAAAAACT TCAGGCAGTC GAACGTCTGG ATGCTTCCTT GAGTATCCCG
GATGAGACAG AGGACGATCC CGGCACCGTA CACCCTGCCT GA
|
|---|
| Protein sequence | MAETAKEIIK VNLEDEMRKS YLDYAMSVIV GRALPDARDG MKPVHRRVLY AMHELGAHSD
KSYFKSARII GEVLGKYHPH GDQSVYDTLV RMAQPFSLRY LLVEGQGNFG SVDGDPAAAM
RYTESRMSRI SHDLIADIDK ETVDFQPNYD EKETEPTVMP TRFPNLLVNG SSGIAVGMAT
NIPPHNLVES INACIALIDN PELDVDGLME YIPGPDFPTA GIINGTAGIV AGYRTGRGRV
RMRAKADIEV ADNGREAIVV TEIPYQVNKA RLIEKIAELV KEKRIDGISE LRDESDKDGM
RIYIEVKRGE SAEVVLNNLY QQTQMESVFG INMVALVDGR PQLLNLKQIL QAFIRHRREV
VTRRTIFELR KARARAHVLE GLTVALANID EMIHLIKTSP SPQEAKERLL AKTWAPGLVG
TLLSASGGEA SRPEDLPQGV GLIGDSYQLT EVQVRQILEM RLHRLTGLEQ DKLAEEYQQL
LEIIVGLIRI LENPDVLLQV IRDELLKIRE EYGDVRRTEI RHSEEDLDIL DLIAPEDVVV
TLSHAGYAKR QPVSAYRAQK RGGRGRAAVT TKEEDFIDHL WLVNTHDTLL TFTSTGKVFW
LSVYQLPEAG SNARGRPIIN WIPLEPGEKV QAVLPVREYA ENHYVFFATR QGTVKKTPLS
EFAFRLARGK IAINLDQGDA LIGVALTDGE RDVLLFASNG KTVRFSENTV RSMGRTATGV
RGIKLTEGEE VVSLIIAEPA TGVDMLEEAE ETADDDIQTA NTADSVHIDP TQDDILCILT
ATENGYGKCT PLAHYPRKGR GTQGVIGIQT TERNGRLVAA VLLGATDEVL LISDGGTLVR
TRGSEISRVG RNTQGVTLIR LSNGEKLQAV ERLDASLSIP DETEDDPGTV HPA
|
|---|
| |