| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Xfasm12_1934 |
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| Symbol | |
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| ID | 6120214 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Xylella fastidiosa M12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010513 |
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| Strand | + |
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| Start bp | 2012600 |
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| End bp | 2015047 |
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| Gene Length | 2448 bp |
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| Protein Length | 815 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 641649889 |
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| Product | DNA topoisomerase I |
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| Protein accession | YP_001776438 |
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| Protein GI | 170731005 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0550] Topoisomerase IA |
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| TIGRFAM ID | [TIGR01051] DNA topoisomerase I, bacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCCAAAC ACCTTCTTAT CGTCGAATCG CCCGCCAAGG CCAAGACGAT CAATAAATAT
CTCGGCAAAG ATTTCACAGT CTTAGCCTCT TACGGGCATG TACGGGATTT GGTACCGAAG
GAAGGCGCAG TCGATCCAGA AAACGGCTTT GCGATGCGCT ACGACCTCAT CGACAAGAAC
GAAAAGCACG TCGAAGCAAT AACAAAAGCG GCCAAAACAG CCGACAGCAT CTATCTAGCA
ACCGACCCTG ATCGCGAAGG CGAAGCGATC AGCTGGCACA TCTCCGAGAT CCTTAAAGAA
CGTGGATTAT TGAAGGACAA ACCGATGCAA CGCATCGTGT TCACCGAGAT CACACCACGC
GCAATAAAGG AAGCAATTCA AAAGCCGCGG ATGATTGCCA GCGACCTGGT AGACGCCCAA
CAAGCACGCC GTGCGCTGGA TTACTTGGTT GGCTTCAACC TCTCACCAGT GCTGTGGCGC
AAAGTACAAC GCGGTTTATC GGCAGGGCGT GTGCAATCGC CAGCACTGCG CATGATTGTC
GAGCGTGAAG AGGAAATTGA GGCATTCATC ACGCGCGAAT ACTGGAGCAT CCATGCCGAG
TGTACCCATC CCGCCCAACA CTTCAGCGCC AAACTCATCA AACTGGATGG AAAAAAATTC
GAGCAATTCA CTATTACCGA CAGCGACACT GCCGCAGCCG CACAACGCAG GATCCAGCAG
GCCGCACAGG GACGCCTGCG CATCACTGAC GTTACCAACA AAGAACGGAA ACGACGCCCT
GCACCGCCCT TCATCACATC CACATTACAG CAAGAAGCCT CACGCAAACT CGGTTTCACT
ACACGTAAAA CGATGCAGAT TGCGCAAAAA CTTTACGAGG GGATCGCACT GGGTGAGGAA
GGCAGCGTCG GCCTGATTAC GTATATGCGT ACCGACTCAG TCAACCTGTC GCTGGATGCT
CTATCGGAGA TCCGCGACAT CATCGCACGC GACTACGGTA CCAACGCACT TCCAGACAAA
CCTAACGTCT ACACCACCAA ATCCAAAAAC GCACAAGAAG CACACGAAGC AGTACGCCCG
ACTTCAGCAC TACGCACCCC GACACAGGTC GCACCGTATC TTTCCAACGA AGAACACCGG
CTATACGAAC TGGTGTGGAA ACGTGCAGTA GCCTCCCAAA TGATCCCAGC CATACTCAAT
ACCACCAGTG TCGATCTAAC CGCCGGCAAC GAACACGTAT TCCGTGCCAC CGGAACCACC
GTCGTGGTAC AAGGTTTCCT AGCTGTGTAC GAAGAAGGCA AGGACAACAA GAACGCCGAA
GACGATGACG AAGGCCGCAA ACTCCCCGTA ATGAAAACCG GGGAAAATGT TCCGCTAGAA
CGTATCCTGA CCGAACAACA CTTTACACAG CCACCACCAC GCTACACCGA AGCAGCGTTG
GTCAAAGCTC TGGAAGAATA CGGCATCGGT CGCCCATCGA CTTACGCCTC CATCATCCAA
ACCCTGCTAT TTCGCAAATA CGTAGACATG GAAGGTCGCA GCTTCCGCCC AACGGACATT
GGCCGCGCCG TATCCAAATT TCTCTCCAGC CACTTCACCC AGTACGTGGA CTACGACTTC
ACCGCACACC TGGAAGATGA ATTGGATGCG ATCTCACGTG GGGAGGAAGA ATGGATCCCA
CTGATGAAAA AGTTTTGGGT CCCCTTCAAA GAATTGGTTG AAGGTAAGAA AGATTCCCTA
GATAAAACCG ACGCTGGCAG CGTGCGCCTG CTCGGCATTG ACCCCACCAG CGGCAAAGAA
GTCAGCGCAC GCATTGGCCG CTTCGGACCG ATGGTGCAAA TCGGCACCGT TGATGATGAA
GAAAAACCAA GATTTGCCTC ATTACGCCCC AACCAAAGCA TCTACTCAAT CAGCCTCGAA
GAAGCCATCG AACTCTTCAA AATGCCACGC GTGCTTGGAG AAGACCAAAG CCAACAGGTC
AGCGTCGGCA TCGGCCGCTT TGGACCGTTT GCCAAACGTG GCAGCACTTA TGTTTCACTG
AAAAGCGAAG ACGATCCCTA CACGATTGAC TTGGCTCGCG CGACCTTTCT CATCAACGAG
AAAGAAGAAA TCGCGCGTAA TCGAATCATC AAAGACTTCG AAAACAGCCA GATCCAAGTA
CTGAACGGAC GCTTCGGTCC CTACATCAGC GATGGCAAAC TTAACGGGAA GATCCCCAAG
GATCGCGAAC CAGCCTCACT GACTCTCGAA GAAGCACAGC AATTACTGAT AGACACTGGG
AAACCGGCAC GCAAAAACTT CAATACGAAA AAAACTGCAA CCAAGAACGA GACGCGCAAA
CAAACCACAA AAAAACGCAC TACGGACGCA AAGGCAACCA AAAAAGTGTC AGATAAGCCC
GTAAAGAAAC AAATCAAAAA ACGCATCGCC CCCAACATTA CCGAATAA
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| Protein sequence | MPKHLLIVES PAKAKTINKY LGKDFTVLAS YGHVRDLVPK EGAVDPENGF AMRYDLIDKN
EKHVEAITKA AKTADSIYLA TDPDREGEAI SWHISEILKE RGLLKDKPMQ RIVFTEITPR
AIKEAIQKPR MIASDLVDAQ QARRALDYLV GFNLSPVLWR KVQRGLSAGR VQSPALRMIV
EREEEIEAFI TREYWSIHAE CTHPAQHFSA KLIKLDGKKF EQFTITDSDT AAAAQRRIQQ
AAQGRLRITD VTNKERKRRP APPFITSTLQ QEASRKLGFT TRKTMQIAQK LYEGIALGEE
GSVGLITYMR TDSVNLSLDA LSEIRDIIAR DYGTNALPDK PNVYTTKSKN AQEAHEAVRP
TSALRTPTQV APYLSNEEHR LYELVWKRAV ASQMIPAILN TTSVDLTAGN EHVFRATGTT
VVVQGFLAVY EEGKDNKNAE DDDEGRKLPV MKTGENVPLE RILTEQHFTQ PPPRYTEAAL
VKALEEYGIG RPSTYASIIQ TLLFRKYVDM EGRSFRPTDI GRAVSKFLSS HFTQYVDYDF
TAHLEDELDA ISRGEEEWIP LMKKFWVPFK ELVEGKKDSL DKTDAGSVRL LGIDPTSGKE
VSARIGRFGP MVQIGTVDDE EKPRFASLRP NQSIYSISLE EAIELFKMPR VLGEDQSQQV
SVGIGRFGPF AKRGSTYVSL KSEDDPYTID LARATFLINE KEEIARNRII KDFENSQIQV
LNGRFGPYIS DGKLNGKIPK DREPASLTLE EAQQLLIDTG KPARKNFNTK KTATKNETRK
QTTKKRTTDA KATKKVSDKP VKKQIKKRIA PNITE
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