| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Xfasm12_1894 |
|---|
| Symbol | |
|---|
| ID | 6120174 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xylella fastidiosa M12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010513 |
|---|
| Strand | - |
|---|
| Start bp | 1974950 |
|---|
| End bp | 1976959 |
|---|
| Gene Length | 2010 bp |
|---|
| Protein Length | 669 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 641649853 |
|---|
| Product | excinuclease ABC subunit B |
|---|
| Protein accession | YP_001776402 |
|---|
| Protein GI | 170730969 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0556] Helicase subunit of the DNA excision repair complex |
|---|
| TIGRFAM ID | [TIGR00631] excinuclease ABC, B subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACAGGTT TGTTTCAGCT TGTTTCTTCA TACTCTCCTT CTGGGGATCA GCCGGCGGCT
GTACAGAAGC TAGTCACTAA TTTCCATGCT GGCATTGCTA AGCAGGTGTT GCTTGGCGTG
ACTGGTTCTG GGAAGACTTA CACCATCGCT AATGTGGTTG AGCAGATTCA GAAGCCAACT
CTGGTGATGG CGCCAAACAA GACGTTGGCA GCACAGCTTT ACGGGGAATT CAAGGCGTTC
TTCCCGCACA ATGCGGTGGA ATATTTTGTC AGCTACTATG ACTACTATCA GCCTGAGGCG
TATGTTCCAG CCTCGGACAC GTTCATTGAA AAGGACAGTT CTATCAATGA ATACATTGAA
CAGATGCGTT TGGCTGCAAC GAAGGCTTTG CTGTCACGTT CTGATGTGTT GGTGGTGGCG
ACTGTGTCGG CGATTTATGG TTTGGGTGCG CCTGAGGATT ATCTTTCGTT ACGTTTGATT
TTGTCGCTGG GTGAGCATAT TGAGCAGCGG CAATTGATCA GGCATCTCAC TGAGTTGCAG
TACACACGTA ACGAGTTGGA TTTGGTGCGT GGTAGTTTCC GTGTACGTGG TGAGGTTGTT
GATGTATTCC CGGCTGAGTC AGAGATGGAG GCGCTGCGCA TTGAGTTGTT TGATGGTGAG
ATAGAAAGTT TGAGCTTGTT CGATCCGCTT ACCGGCCAGA CGGTACGTAA GTTGCAACGT
TTTAGTGTTT ACCCTAAAAC CCACTATGCA ACTACGCGTG AACGTACGCT AAGTGCCGTT
GATACGATCA AGGATGAGCT GAAAGAGTAT CTAGAACTTC TGTATGGGCG GAATAAGTTG
GTTGAGGCGC AACGTTTAGC TCAGCGTACT CAGTTTGACT TAGAGATGAT GGCCGAGGTT
GGTTATTGCA ATGGTATTGA AAATTATTCT CGTCACTTAA CTGGTAAGGC TCCGGGGGAA
CCTCCACCGA CGTTGTTCGA TTATCTGCCT CCGGATGCGC TACTGGTCAT TGATGAGTCG
CACGTGACAA TTCCGCAGAT CGGTGCGATG TTCAAGGGGG ACCGTTCCCG TAAAGAAACG
CTGGTGGAAT TTGGTTTCCG TTTACCATCG GCGTTAGACA ATCGGCCGCT TCGCTTTGAG
GAATGGGAAG TGCGTTCGCC GCGTAGCATT TACGTCTCGG CGACTCCAGG ATCATATGAG
TTCCGCGAGT CCGCAGGTGA AGTCATAGAG TTGCTGGTGC GTCCGACTGG GTTGATTGAT
CCTGAGATAG AAATCCGTCC GGTTGCGACC CAGGTGGATG ATCTGATTTC CCAGATCAAT
GCGTGTATCA AGTTAGGTGA TCGGGTTTTG GTCACCACGT TAACTAAGCG TATGGCTGAG
AACCTCACTG AATATTTGAG CGAGCAGGGT ATCCGGATAC GTTATTTGCA TTCGGAAATC
GATACGGTAG AACGTGTGGA GATCATCCGT GATTTGCGTC TTGGTAAATT CGATGTGCTG
GTTGGTATCA ATCTTCTACG TGAGGGTTTG GATATGCCGG AGGTGTCGTT GGTGGCCATT
CTTGACGCTG ATAAAGAGGG GTTTTTGCGT TCGACCAGTT CACTGATTCA GACGATTGGT
CGTGCCGCAC GCAGTGTGCG CGGTAGGGCA ATCTTGTATG CCGATAAAGT GACTCGTTCA
ATGCGCGCTG CAATTGATGA AACCGAGCGA CGTCGACAAA AGCAGAAGGA ATACAATGCT
GAGAACGGTA TTGTTCCGAA ATCCGTTGTA CGGCCCATTA GCGACATTTT GGAGGGTGCG
CGAGATGGTG TCGAGGTGAA GAGCAAGGGG AAGGGGCGCA GAGTTGATGA GGTTCCCGCT
GACTATGGTG CGCTTAATCA AGCTGAGATT GCCGCGCAGA TGAAAATGCT GGAGCAACAG
ATGTACCAGC ATGCGCGTGA TTTGGAGTTT GAGGATGCGG CGCGTATTCG CGATCAAATT
CAGCGGCTTA GGGAGGCTGG TCTGGGTTAA
|
|---|
| Protein sequence | MTGLFQLVSS YSPSGDQPAA VQKLVTNFHA GIAKQVLLGV TGSGKTYTIA NVVEQIQKPT
LVMAPNKTLA AQLYGEFKAF FPHNAVEYFV SYYDYYQPEA YVPASDTFIE KDSSINEYIE
QMRLAATKAL LSRSDVLVVA TVSAIYGLGA PEDYLSLRLI LSLGEHIEQR QLIRHLTELQ
YTRNELDLVR GSFRVRGEVV DVFPAESEME ALRIELFDGE IESLSLFDPL TGQTVRKLQR
FSVYPKTHYA TTRERTLSAV DTIKDELKEY LELLYGRNKL VEAQRLAQRT QFDLEMMAEV
GYCNGIENYS RHLTGKAPGE PPPTLFDYLP PDALLVIDES HVTIPQIGAM FKGDRSRKET
LVEFGFRLPS ALDNRPLRFE EWEVRSPRSI YVSATPGSYE FRESAGEVIE LLVRPTGLID
PEIEIRPVAT QVDDLISQIN ACIKLGDRVL VTTLTKRMAE NLTEYLSEQG IRIRYLHSEI
DTVERVEIIR DLRLGKFDVL VGINLLREGL DMPEVSLVAI LDADKEGFLR STSSLIQTIG
RAARSVRGRA ILYADKVTRS MRAAIDETER RRQKQKEYNA ENGIVPKSVV RPISDILEGA
RDGVEVKSKG KGRRVDEVPA DYGALNQAEI AAQMKMLEQQ MYQHARDLEF EDAARIRDQI
QRLREAGLG
|
|---|
| |