| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Xfasm12_1077 |
|---|
| Symbol | |
|---|
| ID | 6120702 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xylella fastidiosa M12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010513 |
|---|
| Strand | - |
|---|
| Start bp | 1162232 |
|---|
| End bp | 1164088 |
|---|
| Gene Length | 1857 bp |
|---|
| Protein Length | 618 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 641649102 |
|---|
| Product | thiamine biosynthesis protein ThiC |
|---|
| Protein accession | YP_001775666 |
|---|
| Protein GI | 170730233 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0422] Thiamine biosynthesis protein ThiC |
|---|
| TIGRFAM ID | [TIGR00190] thiamine biosynthesis protein ThiC |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.017294 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGCCGCGCC GCCGCTTCGT CCCGTCACTC TCTGGACGAA CCATCGTGAA CATCACCACT
GCCCTCCCCC TTCCCACCCA CTTGCTGTCG GAGAAGGTGA CTGCACCTTT ACTCGGCGCA
CGCAAAATTT ACGTTACCGG ATCACGCCAA GATATACGTG TGCCAATGCG CGAAATCGCA
CTCACACCCA GCTCAGCTCG ATACGGCGGA AACGAGAATC TATCACTGGT GCTCTATGAC
ACTTCGGGAA TTTACACTGA TCCGCAAGCT ACGATTGACT TAGCGTGTGG TCTACCTCGA
TTACGCACTG CTTGGATTGA TGAGCGTGCC GATACCGTAG AAGCTAAGTT GCATTTCAAA
GTACCTGAGT CGGTATCTGT TACCGCACCG CCTTTCCCTA CACCGCCACG GCCACTGCGT
GCACGTGACA ATGTCGCGGT AACGCAACTG GAATATGCAC GACGTGGCCT CGTCACTCCA
GAAATGGAGT TTGTCGCTAT CCGTGAACAA CAACGCCGTG AACAAACTGT CGAAAATCTT
CGTGGACAGC GCCATGCAGG TGATGCCTGG GGGGCTTTGA TTGGTAAGCC CATCACTCCT
GAATTCGTAC GTGATGAGAT CGCACGTGGC CGCGCGATTC TTCCTAATAA CATCAACCAT
CCTGAAAGCG AGCCAATGAT TATTGGCCGC AACTTTTTGA CAAAAATCAA TGCCAATATT
GGAACATCAG CCCTGTCTTC CAGCATTGCC GAAGAAGTGG AGAAGCTGGT TTGGGCGATC
CGCTGGGGCG CAGACACAAT CATGGACCTC TCTACTGGCC GTGACATCCA TACTACTAGA
GAATGGATTC TGCGTAATTC ACCTGTGCCT GTGGGGACGG TGCCAATTTA TCAAGCTTTG
GAGAAAGTCG GTGGACATGT TGAAGCTCTG AGTTGGGCCG TGTTTCGTGA CACTTTGATC
GAACAGGCCG AACAAGGTGT GGACTATGTC ACCGTGCATG CAGGAGTCCT CCGAGACTTT
ATCCCACTGA CTGCTTCACG TTTAACAGGC ATCGTCTCGC GTGGCGGTTC CATCATGGCT
AGATGGTGTC AGGCACACCG CAGCGAAAAC TTCCTATACA CGCATTTCGA GGAACTCTGT
GAAATCATGC GTGCCTACGA CGTGGCATTT TCTCTGGGTG ATGGATTACG CCCAGGCTGC
ATCGCTGATG CGAATGATGC AGCTCAATTT GCTGAATTGG AGATTCTGGG CAAGTTGACC
CACATCGCCT GGAATCACCA AGTACAGGTG ATGGTAGAAG GTCCTGGACA CGTCCCAATG
CAGCTAATCA AGGCCAATAT GGATAAGCAA TTAGCCGCCT GTGGTGAGGC ACCTTTCTAC
ACGCTAGGTC CATTAACTAC AGATATCGCC CCAGGTTACG ATCACATTAC TAGTGCAATT
GGCGCGGCAA TGATCGGCTG GTATGGGACG GCGATGCTAT GTTACGTGAC TCCGAAGGAG
CATCTTGGCC TGCCTAATTT GCAAGATGTC CATGATGGCA TCATCGCCTA CAAAATTGCG
GCACATGCGG CTGATCTTGC CAAAGGGCAT CCAGCGGCAC AGGTACGTGA CGATGCACTC
TCTAAAGCAC GCTTTGAATT CCGCTGGCAA GATCAATTCC ATCTCAGCTT GGATCCAGAA
AAAGCAATGG CACTGCATGA TGAGAGCCTC CCTAAAGAAG CGCATAAACG AGCAGCATTC
TGTTCGATGT GCGGACCACA ATTTTGTTCA ATGAAAATCT CTCAAGAGGT CCGTGACGCT
TCCTCCACCG AATTGTCAGA TGCAAATAAG GATACCAATA CCAGCGACGG CATCTAG
|
|---|
| Protein sequence | MPRRRFVPSL SGRTIVNITT ALPLPTHLLS EKVTAPLLGA RKIYVTGSRQ DIRVPMREIA
LTPSSARYGG NENLSLVLYD TSGIYTDPQA TIDLACGLPR LRTAWIDERA DTVEAKLHFK
VPESVSVTAP PFPTPPRPLR ARDNVAVTQL EYARRGLVTP EMEFVAIREQ QRREQTVENL
RGQRHAGDAW GALIGKPITP EFVRDEIARG RAILPNNINH PESEPMIIGR NFLTKINANI
GTSALSSSIA EEVEKLVWAI RWGADTIMDL STGRDIHTTR EWILRNSPVP VGTVPIYQAL
EKVGGHVEAL SWAVFRDTLI EQAEQGVDYV TVHAGVLRDF IPLTASRLTG IVSRGGSIMA
RWCQAHRSEN FLYTHFEELC EIMRAYDVAF SLGDGLRPGC IADANDAAQF AELEILGKLT
HIAWNHQVQV MVEGPGHVPM QLIKANMDKQ LAACGEAPFY TLGPLTTDIA PGYDHITSAI
GAAMIGWYGT AMLCYVTPKE HLGLPNLQDV HDGIIAYKIA AHAADLAKGH PAAQVRDDAL
SKARFEFRWQ DQFHLSLDPE KAMALHDESL PKEAHKRAAF CSMCGPQFCS MKISQEVRDA
SSTELSDANK DTNTSDGI
|
|---|
| |