Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Xfasm12_0931 |
Symbol | |
ID | 6120790 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Xylella fastidiosa M12 |
Kingdom | Bacteria |
Replicon accession | NC_010513 |
Strand | - |
Start bp | 1002606 |
End bp | 1005773 |
Gene Length | 3168 bp |
Protein Length | 1055 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 641648975 |
Product | multidrug-efflux transporter |
Protein accession | YP_001775539 |
Protein GI | 170730106 |
COG category | [V] Defense mechanisms |
COG ID | [COG0841] Cation/multidrug efflux pump |
TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCCAAAAT TTTTCATTGA GCACCCAATC TTTGCCTGGG TGGTGGCGAT CCTGATCTCA CTTGCGGGTG TGATCTCGAT CTTCAACCTT GGCGTCGAAT CTTACCCGAG CATCGCTCCA CCCCAAGTGA CCATCACTGC CCATTATCCT GGTGCAAGTG CAGACACACT TGAAAAGTCA GTCACTCAAG TGATCGAACA GCAACTGACC GGCATTGATC ACCTGCTGTA CTTCAGTTCC AGCTCAGCCT CCAATGGGCA AGCCACAATC ACGCTCACTT TTGAAAGCGG CACCAACCCG GATATTGCCC AAGTACAGGT CCAAAATAAG GTATCGCTAG CCACTCCCCG CCTTCCCAGT GAGGTGACCC AGCAAGGTGT GGTGGTGGCT AAAGCTAACG CCGGCTTCCT GATGGTGGCC GCACTACGCT CAGATAACCC TGCATTCGAC AGAGACGCAT TGAACGACTT TGTCGGCACA CACGTGCTTG AGCAAATCTC GCGTGTCCCT GGTGTCGGCA GCACCAATCA GTTCGGTGCA CAGTACGCAA TGAATATCTG GCTGAATCCA GAAAAGCTGC AGGGCTACCA CCTGTCGGCA AGCCAGGTGT ACAACGCAAT CAGTACCCAG AATGTGCAAT TTGCTGCTGG TTCAATCGGC GCTGATCCGG CACCGGCCAA TCAGAGCTTC ACCACAACGG TCACCACAAA AGGCCGCTTC ACCACGCCTG AGCAATTCGA AAACATCATC CTACGTACCA ATAATGACGG CAGCACGGTA CGGCTGAAAG ACGTGGCGCG CGTCAAGATA GGCGCAGAGA GTTATGGCAT TGACTCTCAG TACAACGGTA AACCCGCTGG TGCCTTTGGT GTACAACTGC TGCCTGGCGC CAACGCGTTA CAGGTTGTTG AAAGCATACA TACCAAAATG GACGAGCTGC AAAGCACGTT TCCGCAAGGC GTCACTTGGT TCACTCCTTA TGAAAGCACC ACTTTTATCA AGATATCGAT CAAGGAAGTG GTGAAAACGC TGGCCGAAGC CATTGTTTTA GTCTTCCTTG TGATGTTGAT CTTCCTGCAG AATTTCCGTG CAACGATCAT CCCGACCCTG GTGATTCCGG TCGCCTTGCT CGGTACCTTT GCAGGCATGT TAGCGATTGG ATTCACTATC AACCAACTCA CCTTATTTGC AATGGTGCTA GCTATCGGCA TCGTGGTCGA TGATGCGATC GTGGTAATCG AGAATGTCGA GCGCATCATG ACCGAAGAAC ATTTGGAACC TAAAGCCGCT ACGCAGAAGG CAATGACACA AATCACCGGA GCGGTGATAG CCATCAGCAT CGTTTTGACA GCAGTATTTA TCCCTTCTGC GATGCAACCG GGGGCCGCTG GAGCGATTTA CAAACAATTT GCACTGACAA TTGCGATGTC AATGGGTTTT TCAGCATTCC TGGCGCTCAC CTTCACGCCC GCACTATGCG CGAGTTTCCT GAAATCTAGC CACGGACAAA ATAAAAATTG GATCTTCCGT ACCTTTGAGA AGTACTACGA GAAACTCTCG CACCGCTATG TTCGTCTCAT CAGCAACACA CTCAAGCGTA CTCCACGCTG GACAGCATTT TTTGCGGTAC TCGTCGTCCT CTGTGGCTTT TTATTTACAC GGATGCCTTC AAGCTTCCTG CCTGAGGAGG ACCAAGGCTT CGCGCTAGCG ATTGTGCAGC TTCCACCAGG CGCCACAAAA ACGCGTACGA ACGAAGTATT CACTCAGATG CGCGCTGTAT TGGAGAAAAT ACCGTCCATC GAAGGGCTCA TGCAAATCAC TGGCTTCAGT TTCGTTGGCT CAGGTGAAAA CGTTGGAATG GGCTTCATCC GATTAAAACC CTGGCAGGAA CGTCAGGAGA CCGCCGATCA ACTGATTCAG CAACTGAATG GCATGTTCTA CGGCATCAAG GGGGCGCAAA TCTTTGTGGT CAACCTTCCC ACCGTACAGG GGCTTGGTCA GTTTGGTGGC TTCGATATGT GGCTGCAAGA CCGCAACGGC CTTGGCCACG AAGCATTGAC TCAAGCACGT AATGTGGTGC TCGGCAAAGC GGCACAACGC CAGGATGTGA TGGTTGGTGT GCGTCCGAAT GGACTGGAAA ACTCTCCTCA GCTGCAATTG ACTGTTGATC GTGTACAAGG AGAGTCGATG GGTCTGTCAA CCAGCGATAT CTACAAAGCA ATCCAACTGA TGCTGGCTCC GACCTACGTA AACGACTATT TCTCTGAAGG CCGTATTAAA CGCGTCAACA TGCGTGCCGA TGACATGTAC CGCACCAGTC CTGATTCACT ACGCAATTTC TACACACCCA GCAGTTCTGC TACCGATGTC AATGGCCAAC CATTGATGAT TCCGCTCAGC AACGTCGTAA AGGCCGATTG GATATACGCA GCACCATCAC TCAATCGTTA TAACGGTTAT TCGGCAATCA ATATTGTTGG AAATACAGCC CCTGGTACAT CATCCGGACA AGCAATGAAG GTGTTGGCAA GTATCGTTAA CGACGATCTG CCGCATGGGT TTGGCATTGA TTGGAGCGGG ATGTCCTACC AAGAGATCAT CGCTGGCAAC GCAGCAACGT TACTACTGGT GCTGTCTGTT ATCGTGGTGT TCCTATGCTT ATCAGCACTT TACGAAAGTT GGTCAATCCC CGTGGCTGTA CTGCTGATCG TACCCATCGG TATACTCGGT ACAATCGTGT TCTCCATGCT TCGTGGCTTA CCGAACGATC TGTACTTCAA AATCGGCCTG ATCACGGTCA TTGGTCTTGC AGCAAAAAAT GCAATCCTGA TTGTGGAGTT CGCAGTTGCA CAACGCGCCA CTGGCAAGAC ACTGCGTGAG GCGACCATTG ATGCAGCACG TTTACGCTTC CGCCCAATCC TGATGACATC CTTAGCGTTC ATCCTGGGTG TGCTGCCGCT GGCAATCTCC TCGGGTGCTG GCGCTAACGC GCGACATTCA ATTGGCACTG GGGTGATCGG CGGCATGACA TTCGCAACCA TCTTCGGAGT GATCTTTATC CCACTGCTCT TTGTCGTGGT GCGACGCATC ATCGGCGATA AGCTTGATGA GCAATCCAAG GAATACCTTA AAGCGCAATC AAGCAGCGGC CACCTTCAGA ATCGCTGA
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Protein sequence | MPKFFIEHPI FAWVVAILIS LAGVISIFNL GVESYPSIAP PQVTITAHYP GASADTLEKS VTQVIEQQLT GIDHLLYFSS SSASNGQATI TLTFESGTNP DIAQVQVQNK VSLATPRLPS EVTQQGVVVA KANAGFLMVA ALRSDNPAFD RDALNDFVGT HVLEQISRVP GVGSTNQFGA QYAMNIWLNP EKLQGYHLSA SQVYNAISTQ NVQFAAGSIG ADPAPANQSF TTTVTTKGRF TTPEQFENII LRTNNDGSTV RLKDVARVKI GAESYGIDSQ YNGKPAGAFG VQLLPGANAL QVVESIHTKM DELQSTFPQG VTWFTPYEST TFIKISIKEV VKTLAEAIVL VFLVMLIFLQ NFRATIIPTL VIPVALLGTF AGMLAIGFTI NQLTLFAMVL AIGIVVDDAI VVIENVERIM TEEHLEPKAA TQKAMTQITG AVIAISIVLT AVFIPSAMQP GAAGAIYKQF ALTIAMSMGF SAFLALTFTP ALCASFLKSS HGQNKNWIFR TFEKYYEKLS HRYVRLISNT LKRTPRWTAF FAVLVVLCGF LFTRMPSSFL PEEDQGFALA IVQLPPGATK TRTNEVFTQM RAVLEKIPSI EGLMQITGFS FVGSGENVGM GFIRLKPWQE RQETADQLIQ QLNGMFYGIK GAQIFVVNLP TVQGLGQFGG FDMWLQDRNG LGHEALTQAR NVVLGKAAQR QDVMVGVRPN GLENSPQLQL TVDRVQGESM GLSTSDIYKA IQLMLAPTYV NDYFSEGRIK RVNMRADDMY RTSPDSLRNF YTPSSSATDV NGQPLMIPLS NVVKADWIYA APSLNRYNGY SAINIVGNTA PGTSSGQAMK VLASIVNDDL PHGFGIDWSG MSYQEIIAGN AATLLLVLSV IVVFLCLSAL YESWSIPVAV LLIVPIGILG TIVFSMLRGL PNDLYFKIGL ITVIGLAAKN AILIVEFAVA QRATGKTLRE ATIDAARLRF RPILMTSLAF ILGVLPLAIS SGAGANARHS IGTGVIGGMT FATIFGVIFI PLLFVVVRRI IGDKLDEQSK EYLKAQSSSG HLQNR
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