Gene Xfasm12_0931 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagXfasm12_0931 
Symbol 
ID6120790 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameXylella fastidiosa M12 
KingdomBacteria 
Replicon accessionNC_010513 
Strand
Start bp1002606 
End bp1005773 
Gene Length3168 bp 
Protein Length1055 aa 
Translation table11 
GC content51% 
IMG OID641648975 
Productmultidrug-efflux transporter 
Protein accessionYP_001775539 
Protein GI170730106 
COG category[V] Defense mechanisms 
COG ID[COG0841] Cation/multidrug efflux pump 
TIGRFAM ID[TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCAAAAT TTTTCATTGA GCACCCAATC TTTGCCTGGG TGGTGGCGAT CCTGATCTCA 
CTTGCGGGTG TGATCTCGAT CTTCAACCTT GGCGTCGAAT CTTACCCGAG CATCGCTCCA
CCCCAAGTGA CCATCACTGC CCATTATCCT GGTGCAAGTG CAGACACACT TGAAAAGTCA
GTCACTCAAG TGATCGAACA GCAACTGACC GGCATTGATC ACCTGCTGTA CTTCAGTTCC
AGCTCAGCCT CCAATGGGCA AGCCACAATC ACGCTCACTT TTGAAAGCGG CACCAACCCG
GATATTGCCC AAGTACAGGT CCAAAATAAG GTATCGCTAG CCACTCCCCG CCTTCCCAGT
GAGGTGACCC AGCAAGGTGT GGTGGTGGCT AAAGCTAACG CCGGCTTCCT GATGGTGGCC
GCACTACGCT CAGATAACCC TGCATTCGAC AGAGACGCAT TGAACGACTT TGTCGGCACA
CACGTGCTTG AGCAAATCTC GCGTGTCCCT GGTGTCGGCA GCACCAATCA GTTCGGTGCA
CAGTACGCAA TGAATATCTG GCTGAATCCA GAAAAGCTGC AGGGCTACCA CCTGTCGGCA
AGCCAGGTGT ACAACGCAAT CAGTACCCAG AATGTGCAAT TTGCTGCTGG TTCAATCGGC
GCTGATCCGG CACCGGCCAA TCAGAGCTTC ACCACAACGG TCACCACAAA AGGCCGCTTC
ACCACGCCTG AGCAATTCGA AAACATCATC CTACGTACCA ATAATGACGG CAGCACGGTA
CGGCTGAAAG ACGTGGCGCG CGTCAAGATA GGCGCAGAGA GTTATGGCAT TGACTCTCAG
TACAACGGTA AACCCGCTGG TGCCTTTGGT GTACAACTGC TGCCTGGCGC CAACGCGTTA
CAGGTTGTTG AAAGCATACA TACCAAAATG GACGAGCTGC AAAGCACGTT TCCGCAAGGC
GTCACTTGGT TCACTCCTTA TGAAAGCACC ACTTTTATCA AGATATCGAT CAAGGAAGTG
GTGAAAACGC TGGCCGAAGC CATTGTTTTA GTCTTCCTTG TGATGTTGAT CTTCCTGCAG
AATTTCCGTG CAACGATCAT CCCGACCCTG GTGATTCCGG TCGCCTTGCT CGGTACCTTT
GCAGGCATGT TAGCGATTGG ATTCACTATC AACCAACTCA CCTTATTTGC AATGGTGCTA
GCTATCGGCA TCGTGGTCGA TGATGCGATC GTGGTAATCG AGAATGTCGA GCGCATCATG
ACCGAAGAAC ATTTGGAACC TAAAGCCGCT ACGCAGAAGG CAATGACACA AATCACCGGA
GCGGTGATAG CCATCAGCAT CGTTTTGACA GCAGTATTTA TCCCTTCTGC GATGCAACCG
GGGGCCGCTG GAGCGATTTA CAAACAATTT GCACTGACAA TTGCGATGTC AATGGGTTTT
TCAGCATTCC TGGCGCTCAC CTTCACGCCC GCACTATGCG CGAGTTTCCT GAAATCTAGC
CACGGACAAA ATAAAAATTG GATCTTCCGT ACCTTTGAGA AGTACTACGA GAAACTCTCG
CACCGCTATG TTCGTCTCAT CAGCAACACA CTCAAGCGTA CTCCACGCTG GACAGCATTT
TTTGCGGTAC TCGTCGTCCT CTGTGGCTTT TTATTTACAC GGATGCCTTC AAGCTTCCTG
CCTGAGGAGG ACCAAGGCTT CGCGCTAGCG ATTGTGCAGC TTCCACCAGG CGCCACAAAA
ACGCGTACGA ACGAAGTATT CACTCAGATG CGCGCTGTAT TGGAGAAAAT ACCGTCCATC
GAAGGGCTCA TGCAAATCAC TGGCTTCAGT TTCGTTGGCT CAGGTGAAAA CGTTGGAATG
GGCTTCATCC GATTAAAACC CTGGCAGGAA CGTCAGGAGA CCGCCGATCA ACTGATTCAG
CAACTGAATG GCATGTTCTA CGGCATCAAG GGGGCGCAAA TCTTTGTGGT CAACCTTCCC
ACCGTACAGG GGCTTGGTCA GTTTGGTGGC TTCGATATGT GGCTGCAAGA CCGCAACGGC
CTTGGCCACG AAGCATTGAC TCAAGCACGT AATGTGGTGC TCGGCAAAGC GGCACAACGC
CAGGATGTGA TGGTTGGTGT GCGTCCGAAT GGACTGGAAA ACTCTCCTCA GCTGCAATTG
ACTGTTGATC GTGTACAAGG AGAGTCGATG GGTCTGTCAA CCAGCGATAT CTACAAAGCA
ATCCAACTGA TGCTGGCTCC GACCTACGTA AACGACTATT TCTCTGAAGG CCGTATTAAA
CGCGTCAACA TGCGTGCCGA TGACATGTAC CGCACCAGTC CTGATTCACT ACGCAATTTC
TACACACCCA GCAGTTCTGC TACCGATGTC AATGGCCAAC CATTGATGAT TCCGCTCAGC
AACGTCGTAA AGGCCGATTG GATATACGCA GCACCATCAC TCAATCGTTA TAACGGTTAT
TCGGCAATCA ATATTGTTGG AAATACAGCC CCTGGTACAT CATCCGGACA AGCAATGAAG
GTGTTGGCAA GTATCGTTAA CGACGATCTG CCGCATGGGT TTGGCATTGA TTGGAGCGGG
ATGTCCTACC AAGAGATCAT CGCTGGCAAC GCAGCAACGT TACTACTGGT GCTGTCTGTT
ATCGTGGTGT TCCTATGCTT ATCAGCACTT TACGAAAGTT GGTCAATCCC CGTGGCTGTA
CTGCTGATCG TACCCATCGG TATACTCGGT ACAATCGTGT TCTCCATGCT TCGTGGCTTA
CCGAACGATC TGTACTTCAA AATCGGCCTG ATCACGGTCA TTGGTCTTGC AGCAAAAAAT
GCAATCCTGA TTGTGGAGTT CGCAGTTGCA CAACGCGCCA CTGGCAAGAC ACTGCGTGAG
GCGACCATTG ATGCAGCACG TTTACGCTTC CGCCCAATCC TGATGACATC CTTAGCGTTC
ATCCTGGGTG TGCTGCCGCT GGCAATCTCC TCGGGTGCTG GCGCTAACGC GCGACATTCA
ATTGGCACTG GGGTGATCGG CGGCATGACA TTCGCAACCA TCTTCGGAGT GATCTTTATC
CCACTGCTCT TTGTCGTGGT GCGACGCATC ATCGGCGATA AGCTTGATGA GCAATCCAAG
GAATACCTTA AAGCGCAATC AAGCAGCGGC CACCTTCAGA ATCGCTGA
 
Protein sequence
MPKFFIEHPI FAWVVAILIS LAGVISIFNL GVESYPSIAP PQVTITAHYP GASADTLEKS 
VTQVIEQQLT GIDHLLYFSS SSASNGQATI TLTFESGTNP DIAQVQVQNK VSLATPRLPS
EVTQQGVVVA KANAGFLMVA ALRSDNPAFD RDALNDFVGT HVLEQISRVP GVGSTNQFGA
QYAMNIWLNP EKLQGYHLSA SQVYNAISTQ NVQFAAGSIG ADPAPANQSF TTTVTTKGRF
TTPEQFENII LRTNNDGSTV RLKDVARVKI GAESYGIDSQ YNGKPAGAFG VQLLPGANAL
QVVESIHTKM DELQSTFPQG VTWFTPYEST TFIKISIKEV VKTLAEAIVL VFLVMLIFLQ
NFRATIIPTL VIPVALLGTF AGMLAIGFTI NQLTLFAMVL AIGIVVDDAI VVIENVERIM
TEEHLEPKAA TQKAMTQITG AVIAISIVLT AVFIPSAMQP GAAGAIYKQF ALTIAMSMGF
SAFLALTFTP ALCASFLKSS HGQNKNWIFR TFEKYYEKLS HRYVRLISNT LKRTPRWTAF
FAVLVVLCGF LFTRMPSSFL PEEDQGFALA IVQLPPGATK TRTNEVFTQM RAVLEKIPSI
EGLMQITGFS FVGSGENVGM GFIRLKPWQE RQETADQLIQ QLNGMFYGIK GAQIFVVNLP
TVQGLGQFGG FDMWLQDRNG LGHEALTQAR NVVLGKAAQR QDVMVGVRPN GLENSPQLQL
TVDRVQGESM GLSTSDIYKA IQLMLAPTYV NDYFSEGRIK RVNMRADDMY RTSPDSLRNF
YTPSSSATDV NGQPLMIPLS NVVKADWIYA APSLNRYNGY SAINIVGNTA PGTSSGQAMK
VLASIVNDDL PHGFGIDWSG MSYQEIIAGN AATLLLVLSV IVVFLCLSAL YESWSIPVAV
LLIVPIGILG TIVFSMLRGL PNDLYFKIGL ITVIGLAAKN AILIVEFAVA QRATGKTLRE
ATIDAARLRF RPILMTSLAF ILGVLPLAIS SGAGANARHS IGTGVIGGMT FATIFGVIFI
PLLFVVVRRI IGDKLDEQSK EYLKAQSSSG HLQNR