| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Xfasm12_0869 |
|---|
| Symbol | |
|---|
| ID | 6120728 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xylella fastidiosa M12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010513 |
|---|
| Strand | + |
|---|
| Start bp | 942362 |
|---|
| End bp | 942922 |
|---|
| Gene Length | 561 bp |
|---|
| Protein Length | 186 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 641648920 |
|---|
| Product | subunit C of alkyl hydroperoxide reductase |
|---|
| Protein accession | YP_001775485 |
|---|
| Protein GI | 170730052 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0450] Peroxiredoxin |
|---|
| TIGRFAM ID | [TIGR03137] peroxiredoxin |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.00649745 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCTGTTC TCAACACTGA AATACTTTCA TTCAAGGCGA TTGCTTACAA GAATGGCCAA
TTCGTTGAAG TTTCGGAGGC GGTTCTCAAG GGAAAGTGGG CTGTGTTTGT TTTCTATCCT
GCTGATTTTA CTTTCGTCTG TCCGACTGAA CTGGAAGATT TGGCTGATCA TTATGAGGAA
TTCCAGAAGT ATGGGGTTGA GATATATTCG GTTTCCACAG ACACGCATTT TTCACATAAG
GCTTGGCACG ATATTTCACC AGCGATTGGC AAGATTAAGT ATGCGATGAT CGGTGATCCG
ACGCATGAGA TCAGTAGGAA TTTCAATGTG TTGCGTCCAA GTGGTTTGGC TGATCGCGGC
ACTTTCATCA TTGATCCGCA GGGTGTGATT CAGTCGGTGG AGATTACTGC TGAGGGCATT
GGCCGTGATG CAAAAGAACT CTTGCGTAAG GTTAAAGCTG CGATTTATGT TGCCAATCAT
CCTGGCGAGG TTTGCCCAGC TAAGTGGGAA GAAGGCGGGA AAACTCTGGC ACCGTCGTTG
GATTTGGTCG GTAAAATCTG A
|
|---|
| Protein sequence | MSVLNTEILS FKAIAYKNGQ FVEVSEAVLK GKWAVFVFYP ADFTFVCPTE LEDLADHYEE
FQKYGVEIYS VSTDTHFSHK AWHDISPAIG KIKYAMIGDP THEISRNFNV LRPSGLADRG
TFIIDPQGVI QSVEITAEGI GRDAKELLRK VKAAIYVANH PGEVCPAKWE EGGKTLAPSL
DLVGKI
|
|---|
| |