| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Xfasm12_0866 |
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| Symbol | |
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| ID | 6120725 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Xylella fastidiosa M12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010513 |
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| Strand | + |
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| Start bp | 934699 |
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| End bp | 937026 |
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| Gene Length | 2328 bp |
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| Protein Length | 775 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 641648918 |
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| Product | general secretory pathway protein D precursor |
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| Protein accession | YP_001775483 |
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| Protein GI | 170730050 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02517] general secretion pathway protein D |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.00112703 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATTTCGC GTCTTTTAAC TGTTTCGATA GTCACTGCCC TTTTGGGTGC TTGTGTTACC
CCACCATCGC CGATGATTAA GCGGAATACT CTTCTGCATA AACATCCTGC TACTGCAGAC
ATACCGACGA CACAGCTCCC TGACGCTGTG GGGACGGCCA CTGTGTCGCT GCCTGACACT
ACGGAGACGC CGAATGCGCT GCTTTCTGAT GCTGGTGGCC CGCTCCCGGT GATTCGTCGT
GGTAATGGGA AAGTGATTAA TCAGACTGTT GCTGCAACTC CACCGCCATC AATGGGTGTG
GCTGGAAAAG GTAGTGCTAT CTTTAACTTC GAAGGAGAGT CGTTGCAGGC TGTGGTCAAA
GCCATTCTTG GCGACATGCT AGGGCAAAAC TATTTCATTG CATCTGGCGT GCAGGGGACG
GTAACTCTTT CCACACCTAA GCCTGTCTCG TCGGCACAGG CGCTGAGTCT CTTGGAGATG
GTATTGGGTT GGAACAACGC ACGGATGATT TATAACAATG GACGTTATAG CATTGTCCAG
GCCGACCAGG CGCTAGCTGG TACGGTTGCG CCGAGTACTG CACCGTCGGC GGTTGCCCGT
GGCTTTGAAG TCCGTGTGGT ACCACTGAAG TACATCTCGG CGAGCGAGAT GAAAAAAGTG
CTTGATCCAT ACGCACGTCC TAATGCGATT GTCAGCATTG ATACAACGCG CAACCTGATT
ACCCTTGCGG GTACCCGTGT TGAGCTAGAG AACTATCTGC GCACTGTTCA AATTTTCGAT
GTTGATTGGT TGTCTGGTAT GTCGGTGGGT GTGTTCCCAA TTCAATCAGG CAAGGCGGAT
AAAGTTGCTG CCGATTTGGA AAAAGTGTTT GGCGAGAGCG GAAAAACGCC TAGCGCCGGT
ATGTTCCGTT TTATGCCTCT GGAGAGTGCT AACGCTGTTT TGGTGATTAC CCCACAGGCT
AGTTATCTGG ATCAGATTCA GAAATGGTTG GATAGTGTCG ACAGTGTTGG AGGTGCTTTG
AGTTTGTTCT CTTACGCGCT GAAGTACATC AAGGCCAATG ATTTAGCTAA TCGTCTGGCG
GAAGTATTTG GGGTCGGTTC TAGGCGTGAA GATAGTAATG TGTCGCTGGC TCCAGGCGCG
CAACTTGGCG TCTTGGGAAG TGGTGGAAGT GGCGATAACC TGCCAAGTGC TGGTGGTGGC
GGTAGCCTTT CTGCTGTTCC CAGTAACGGA GGGGCGGATA ACACGAGCAG TGCGAATGGT
GGTTTGGGGG GCAGTACGCT CCAGTTGTCA CCACGCACCC AAGGCAATGG CAGTGTGACT
CTTCATGTGC AGGGCGATAC CGTCGGTGTG TCGGCGGTGG AGGAAATTAA TACCTTGCTG
GTCCGTGCTA CTCCCCAAGC GTGGAGATCG ATACGTGATG TGATTGAGAA GCTTGATGTG
ATGCCGATGC AGGTACATAT CGAAGCTCAG GTCGCTGAGG TCAGCCTCAC CAACCAGCTC
AGCTATGGTG TGAATTGGTT TTTCCAGAAT TCTGTAAATG CTGCTGCTGA TGCGGCGGAT
AATGGCGCTT CCAACGGGAC TGGCATTGGC CTAGGTGCGG GCCTGCCTAG TGCCGCTGGG
CGTTCGGGGT GGAAGAGCAT TGCCGGTAAG GTCACCAGCA ATGGGTTGGC TTGGACGTTC
CTTGGAAAGA ACGCCGCAGC GATTATCAAT GCATTGGACC AAGTCACCCA GGTCCGTTTG
CTACAGACGC CGTCAGTATT CGTGCGTAAC AACGCCGAGG CCACGCTCAA CGTGGGTGCG
CGTATTCCAA TCAATTCCAC CTCAATTAAC ACCGGTCTGG GCAGTAACAG TACCTACTCC
TCAGTGCAGT ACATTGATAC CGGCGTCATT TTGAAAGTGC GTCCGCGCGT GACTAAGGAC
GGAATGGTGT TTTTGGACAT CGTACAGGAG GTCAGCACCC CTGGTTCACT GCCAGCGGCA
TGTAGCTCTG CTAGTTCGAC GTTGGTCAAC AGCGCCGCGT GCAATGTCCA GATCAACACA
CGCAGGATTA AGACGGAGGC CGCGGTGCAG AGTGGCGATA CGATCATGCT TGCTGGCCTG
ATTGACAGTA ATAGCGGTAA AGGCAGTAAC GGGGTCCCGT TCCTGAGTAA GGTGCCGATA
GTCGGTGGGT TGTTTGGTAC GAAGGCGCAG AATAATAATC GCAGGGAAAT CATTGTGTTA
CTGACCCCAG AGATTGTGCG TAACCCTCAG GAGGCGCGTA ATCTTACTGA TGAATACAGT
CAAAAATTCA ACGCAATGGA GCCATTACCA GGATTGAATA CAAAATGA
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| Protein sequence | MISRLLTVSI VTALLGACVT PPSPMIKRNT LLHKHPATAD IPTTQLPDAV GTATVSLPDT
TETPNALLSD AGGPLPVIRR GNGKVINQTV AATPPPSMGV AGKGSAIFNF EGESLQAVVK
AILGDMLGQN YFIASGVQGT VTLSTPKPVS SAQALSLLEM VLGWNNARMI YNNGRYSIVQ
ADQALAGTVA PSTAPSAVAR GFEVRVVPLK YISASEMKKV LDPYARPNAI VSIDTTRNLI
TLAGTRVELE NYLRTVQIFD VDWLSGMSVG VFPIQSGKAD KVAADLEKVF GESGKTPSAG
MFRFMPLESA NAVLVITPQA SYLDQIQKWL DSVDSVGGAL SLFSYALKYI KANDLANRLA
EVFGVGSRRE DSNVSLAPGA QLGVLGSGGS GDNLPSAGGG GSLSAVPSNG GADNTSSANG
GLGGSTLQLS PRTQGNGSVT LHVQGDTVGV SAVEEINTLL VRATPQAWRS IRDVIEKLDV
MPMQVHIEAQ VAEVSLTNQL SYGVNWFFQN SVNAAADAAD NGASNGTGIG LGAGLPSAAG
RSGWKSIAGK VTSNGLAWTF LGKNAAAIIN ALDQVTQVRL LQTPSVFVRN NAEATLNVGA
RIPINSTSIN TGLGSNSTYS SVQYIDTGVI LKVRPRVTKD GMVFLDIVQE VSTPGSLPAA
CSSASSTLVN SAACNVQINT RRIKTEAAVQ SGDTIMLAGL IDSNSGKGSN GVPFLSKVPI
VGGLFGTKAQ NNNRREIIVL LTPEIVRNPQ EARNLTDEYS QKFNAMEPLP GLNTK
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