| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Xfasm12_0703 |
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| Symbol | |
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| ID | 6119388 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Xylella fastidiosa M12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010513 |
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| Strand | + |
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| Start bp | 753988 |
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| End bp | 755859 |
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| Gene Length | 1872 bp |
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| Protein Length | 623 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 641648766 |
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| Product | RNA polymerase sigma factor RpoD |
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| Protein accession | YP_001775331 |
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| Protein GI | 170729898 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGAAGCC CCATCATGTC CAATGAACGA ACTGCTCAGC AATCCGATAT CAAGCAACTG
ATCAGCAAGG GGTTGGAGCA GGGTTACCTG ACTTACGCCG AAGTCAATGA TCACCTACCA
GAGGATCTGG TGGATCCTGA TCAAATTGAA GACATTATTG GGATGATTAA CGGAATGGGC
ATTGAGGTCC ATGAAGTGGC TCCCGATGCT GAGACTTTGT TGCTTAACGA AGGAAACACT
GGGAACAGGG AAGTCGACGA TACTGCTGCA GAAGAGGCCG CAGCTGCGCT TAGCGCCCTT
GATACTGAAG CAGGACGTAC TACCGATCCG GTACGTATGT ACATGCGTGA GATGGGTACG
GTCGAACTAT TAACCCGTGA AGGTGAAATA GCAATTGCAA AGCGTATTGA AGAAGGCTTG
AGCGAGGTAC AAGCTGCTTT AGGCGCTTTC CCGTTATCTA CGGAATTACT GCTTAGTGAA
TATGAGTTGC ATAAAGAAGG TAAGCGGCGT CTGACTGAGG TTGTCGTTGG CTTTAATGAT
TTGATAGAGG ACGATAACTC CGTAACCTCC TCAGTGGACG TTACTGACGA GTCCATTGTT
GAGGTTGACG AAGAAGACGA TGACAGTGTC GGTAATGATG AGGATGCGCC TATGATTGGT
CCTGATCCTG CCGAAGTTGC TTCGCGTATC GAATCGCTGT CCACTGAGTA TGCCAAGTTC
AAGAAACTTT ACGCCAAGCA TGGCCCTGAG CACAAAGCAG TCATTAAGGT GCGTGAAGAT
ATGGCTGCGA TCTTTGTGAC GTTCAAACTG TCGTTGCCAT TGACCGATTT GCTTGTTCAG
CAGCTACAGA ATATGGTGAA TTCTGTCAAG GATCATGAGC GCAAAGTGCT TCACTTGGCA
ACGAATGTAG CCAAAATGCC GCGTAAAGAC TTCATCCGTT CCTGGGAAAA CAACCAGACA
AATTTAGAAT GGGTGGAGGA TGCGATTAAG CGCAAGCAGA AATGGTCCTC TGCGTTGCGT
GATATCAAAG ATCAGATCAC CGCTGAGCAG CAATCTTCCA TTGATTTGGA GAAAGTCAAT
TCTTTGACGT TAGCCGACAT CAAAGAGATT AACCGTATGA TGGTTTATGG TGAAGCAAAA
GCATCCAAGG CGAAGAAAGA GATGGTTGAA GCTAATCTTC GCTTAGTGAT ATCGATTGCT
AAGAAGTATA CCAACCGAGG GTTGCAGTTC CTGGATTTGA TACAGGAAGG CAACATCGGT
TTGATGAAAG CAGTGTGTAA GTTTGAACAC CGTCGCGGCT TTAAGTTCTC CACCTATGCG
ACTTGGTGGA TCCGTCAGGC AATTACTCGT TCTATTGCCG ATCAGGCGCG CACCATTCGT
ATCCCGGTGC ATATGATTGA GACGATCAAC AAACTTAACC GTATCTCTCG TCAAATGTTG
CAGCAGTTTG GTCGCGAGGC GACTCCAGAG GAATTGGCTA AGGAAATGGA CATGCCTGAG
GACAAGATCC GTAAGGTAAT GAAGATTGCT AAAGAGCCAA TCTCAATGGA GACTCCGATC
GGGGATGATG AAGATTCTCA TCTGGGTGAC TTCATTGAGG ATCCTAATGT TGAGTCTCCT
GTGGATACCA CAACCAATGT CAACTTGTCG GAAACAGTGC GTGAAGTGTT GGCTGGTTTG
ACACCAAGAG AGGCGAAGGT TCTGCGTATG CGTTTCGGTA TTGACATGAA TACAGACCAC
ACTCTGGAGG AGGTGGGTAA ACAATTTGAT GTCACTCGTG AACGTATTCG CCAGATTGAA
GCCAAAGCAT TACGGAAACT TCGTCATCCA AGCCGTTCTG AACAACTGCG CTCATTCCTT
GATATTGACT GA
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| Protein sequence | MRSPIMSNER TAQQSDIKQL ISKGLEQGYL TYAEVNDHLP EDLVDPDQIE DIIGMINGMG
IEVHEVAPDA ETLLLNEGNT GNREVDDTAA EEAAAALSAL DTEAGRTTDP VRMYMREMGT
VELLTREGEI AIAKRIEEGL SEVQAALGAF PLSTELLLSE YELHKEGKRR LTEVVVGFND
LIEDDNSVTS SVDVTDESIV EVDEEDDDSV GNDEDAPMIG PDPAEVASRI ESLSTEYAKF
KKLYAKHGPE HKAVIKVRED MAAIFVTFKL SLPLTDLLVQ QLQNMVNSVK DHERKVLHLA
TNVAKMPRKD FIRSWENNQT NLEWVEDAIK RKQKWSSALR DIKDQITAEQ QSSIDLEKVN
SLTLADIKEI NRMMVYGEAK ASKAKKEMVE ANLRLVISIA KKYTNRGLQF LDLIQEGNIG
LMKAVCKFEH RRGFKFSTYA TWWIRQAITR SIADQARTIR IPVHMIETIN KLNRISRQML
QQFGREATPE ELAKEMDMPE DKIRKVMKIA KEPISMETPI GDDEDSHLGD FIEDPNVESP
VDTTTNVNLS ETVREVLAGL TPREAKVLRM RFGIDMNTDH TLEEVGKQFD VTRERIRQIE
AKALRKLRHP SRSEQLRSFL DID
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