| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Xfasm12_0628 |
|---|
| Symbol | |
|---|
| ID | 6120392 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xylella fastidiosa M12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010513 |
|---|
| Strand | - |
|---|
| Start bp | 688167 |
|---|
| End bp | 689285 |
|---|
| Gene Length | 1119 bp |
|---|
| Protein Length | 372 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 641648697 |
|---|
| Product | ABC transporter permease |
|---|
| Protein accession | YP_001775262 |
|---|
| Protein GI | 170729829 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0767] ABC-type transport system involved in resistance to organic solvents, permease component |
|---|
| TIGRFAM ID | [TIGR00056] conserved hypothetical integral membrane protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0000296062 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCGAAAA AGACCGTTAC TGCACCGCAC ATTGAACAAG ACGCCCAAGA CCGTGGCCAG
ATACACCTGA GCGGCAGCTG GGTGTTAGCT AACGTATTAA CGGCATCCGA ATTACTTCAG
TCATATAGCA ACTCCATCCA GCACATCAAC GCACGCAATA TCGACCAACT CGATTCGGCC
GGCGCATTAC AGCTGCTGCG TTTCGCCACA CGTACAGGAC TGAAAAACGA AGCAATCGAA
TTTCGGGAAG AACACCGCCC CTTGATCTCC ACAATTGAGA TTCTCGACGA TGAGCATCCC
AAACCTGAAC GTGACTACGG TTTTCTTGCA GCACTGGAAC GCCTAGGCAT CGCGGTTGTC
AAAACCCGCC GCAATATTAT CGACGTATGC AGCTTCCTCG GCGAGAACTT GGTGAAGATA
GCCCAACTGG CTCGCGAACC ACGGCGGTTC CGCATCACCT CGACCGTGCA CCACATGGAG
CAAGTCGGTT TGGATGCGGT GCCTCTGGTG GTGGTGCTGT CGTATTTGGT AGGCGCGGTA
ATTGCATTCC TAGGTTCGAC CATCTTGCGC AACTTTGGCG CAGAAATCTT CGTCGTCGAA
TTAGTCAACA TTGCCTTCCT GCGTGAGTTC GCAGTGCTGT TAACCGCAAT TGTCCTGGCC
GGTCGTACCG CCAGCGCGTT CACAGCACAA ATCGGTGCGA TGAAGTCGCG CGAAGAAATC
GACGCAATCC AAACTTTAGG CCTAGACCCG ATCGACCTGC TAGTCATCCC ACGTCTTATC
GCATTGCTAG TCATGCTCCC ACTATTGACC TTCATCGCAA TGATCGCCGG CTTAGCTGGA
GGAATTACGG TTGGCGCATT TGACCTAGGC ATCCCTCCGC AAATGTACTT GTCACGCATG
CACGAAACCA TGCAATTCCG GCACTTCATA ATAGGGATGT CCAAAGCACC ACTGTTTGCA
CTGATTATTG GATTGATCGG CTGTCTGGAG GGACTCAAAG TCACCGGCAC CGCACAATCC
GTCGGCAAAC ATACCACCTC CAGTGTTGTA CAAACGATCT CGCTAGTCAT CATCATTGAT
GCCTTAGCAG CACTGTGGTT CATGCGTATG GGTTGGTGA
|
|---|
| Protein sequence | MPKKTVTAPH IEQDAQDRGQ IHLSGSWVLA NVLTASELLQ SYSNSIQHIN ARNIDQLDSA
GALQLLRFAT RTGLKNEAIE FREEHRPLIS TIEILDDEHP KPERDYGFLA ALERLGIAVV
KTRRNIIDVC SFLGENLVKI AQLAREPRRF RITSTVHHME QVGLDAVPLV VVLSYLVGAV
IAFLGSTILR NFGAEIFVVE LVNIAFLREF AVLLTAIVLA GRTASAFTAQ IGAMKSREEI
DAIQTLGLDP IDLLVIPRLI ALLVMLPLLT FIAMIAGLAG GITVGAFDLG IPPQMYLSRM
HETMQFRHFI IGMSKAPLFA LIIGLIGCLE GLKVTGTAQS VGKHTTSSVV QTISLVIIID
ALAALWFMRM GW
|
|---|
| |