Gene Xfasm12_0552 details

Gene Information

• Locus tag: Xfasm12_0552
• ID: 6120959
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Xylella fastidiosa M12
• Kingdom: Bacteria
• Replicon accession: NC_010513
• Strand: +
• Start bp: 600228
• End bp: 602057
• Gene Length: 1830 bp
• Protein Length: 609 aa
• Translation table: 11
• GC content: 49%
• IMG OID: 641648621
• Product: GTP-binding elongation factor protein
• Protein accession: YP_001775187
• Protein GI: 170729754
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG1217] Predicted membrane GTPase involved in stress response
• TIGRFAM ID: [TIGR00231] small GTP-binding protein domain; [TIGR01394] GTP-binding protein TypA/BipA

Plasmid Coverage information

• Num covering plasmid clones: 28
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCCATAG AAAATCTCCG TAATATCGCC ATCGTTGCTC ACGTTGACCA TGGTAAGACC 
ACTCTTGTTG ATCAGTTGCT TAAGCAATCT GGGACTTTCA GCGAACGTGC CCAGGTGGGT 
GAGCGCGTGA TGGACAGCAA TGACCAGGAA AAGGAACGCG GTATCACAAT TCTTGCTAAA 
AATACGGCAA TCAAATGGAA TGGTAACCGC ATCAACATTG TTGATACTCC TGGGCATGCT 
GATTTTGGAG GGGAGGTTGA ACGCGTATTG TCGATGGTTG ATTCAGTCCT ACTGTTGGTG 
GATGCAATGG ATGGGCCAAT GCCGCAGACG CGCTTCGTGA CTCAGAAGGC TTTTGCAATG 
GGGTTTAAGC CGATTGTGGT GGTCAACAAG ATTGATCGTC CTGGTGCTCG TCCGGATTGG 
GTTGTTGAGC AGGTTTGGGA CTTATTCGAC TGTCTCGGTG CTACGCCAGA GCAGATGGAC 
TTTCCGATTG TCTATGCCTC GGCACTAAAT GGCTATGCCA GCTTGGAGTC AAGTGCGCGG 
GCGGGGGATA TGAATCCGCT GTACGAAGCG ATCATGCAGC ACGTTCAACC GCCGCAAGTT 
GACCTGCATG GCCCATTTCA GATGCGTATC AGTCAATTGG ACTACAACAG TTACGTTGGT 
CTCATTGGTA TTGGTCGGAT TCAACGTGGC AAGGTGTCTA CTAACATGCC GGTGACGGTC 
ATTGATCGCA TAGGTAATAA ACATAATGGT AAAGTTCTCC AGGTACTAGG TTTCCTTGGT 
CTGGAGCGTC ATGAAGTTGA GGAAGCCCAG GCAGGCGATA TCGTTGCTAT TTCAGGTATT 
GAGTCACTCA GTATTTCCGA TACCCTTACT GACCCAACGG CCCCAGATGC GCTGCCAGCA 
TTGAGCGTCG ATGAACCGAC AATCAGTATG ACCTTTCAAG TCAATAATTC GCCATTTGCT 
GGGCAGAAGG AATATTCGGG TGGGAAGTTC CTGACAAGCC GTCAGATCCG TGAACGCTTG 
GCTCGCGAAA CTTTACATAA TGTTGCCTTG CGTGTTGAGG ATACTGAGGA TCCTGACAGA 
TTTAAGGTTT CCGGCCGAGG TGAGCTGCAC TTGTCTGTCT TGATTGAGAC TATGCGGCGT 
GAGGGCTATG AATTGGGTGT ATCGCGCCCG GAAGTCATCA TCAAGGAAAT CGATGGAATA 
CTCCAAGAGC CTTACGAGCA GTTAGTCGTG GACGTGGAGG AGGAGCATCA AGGTGGTGTG 
ATAGAGCGCT TGGGCACGCG TAAAGCTCAG TTGTCAAATA TGGAGTTGGA TGGTAAAGGG 
CGTGTACGTT TGGATTACAT TATCCCTGCG CGTGGTTTGA TTGGTTTCCA GACTGAGTTT 
AAAACCATCA CTTCTGGGAG CGGCCTTCTG TTCCACATCT TTGATCACTA TGGTCCGAAA 
GCTGATGGTC CGATTGCCAA GCGTATCAAC GGTGTCATGA TCTCTAATGG TCATGGCAAA 
GCACCTGGGT ATGCTTTGAT GGGCTTGCAA GAACGTGGGC GTTTGCTGAT TGATGCTGGT 
GAGGATATTT ACGAAGGCAT GTTAGTTGGC ATCCATTCCA AGGATAATGA CTTGACCGTC 
AATGCACTTC GAGAGAAACA ATTGACAAAT ATTCGTGCTT CTGGGAAGGA CGACGCGATC 
TCATTGACCC CGCCCATTAA GATGTCCTTG GAGCAGGCGT TAGAGTTTAT CGAAGATGAC 
GAGTTGGTTG AGGTCACGCC GAAGGCAATC CGGTTACGGA AAAAATACCT TAGTGAAAAT 
GATCGCAAGC GTGCCAGTCG TACTGGCTGA 

 

Protein sequence

MSIENLRNIA IVAHVDHGKT TLVDQLLKQS GTFSERAQVG ERVMDSNDQE KERGITILAK 
NTAIKWNGNR INIVDTPGHA DFGGEVERVL SMVDSVLLLV DAMDGPMPQT RFVTQKAFAM 
GFKPIVVVNK IDRPGARPDW VVEQVWDLFD CLGATPEQMD FPIVYASALN GYASLESSAR 
AGDMNPLYEA IMQHVQPPQV DLHGPFQMRI SQLDYNSYVG LIGIGRIQRG KVSTNMPVTV 
IDRIGNKHNG KVLQVLGFLG LERHEVEEAQ AGDIVAISGI ESLSISDTLT DPTAPDALPA 
LSVDEPTISM TFQVNNSPFA GQKEYSGGKF LTSRQIRERL ARETLHNVAL RVEDTEDPDR 
FKVSGRGELH LSVLIETMRR EGYELGVSRP EVIIKEIDGI LQEPYEQLVV DVEEEHQGGV 
IERLGTRKAQ LSNMELDGKG RVRLDYIIPA RGLIGFQTEF KTITSGSGLL FHIFDHYGPK 
ADGPIAKRIN GVMISNGHGK APGYALMGLQ ERGRLLIDAG EDIYEGMLVG IHSKDNDLTV 
NALREKQLTN IRASGKDDAI SLTPPIKMSL EQALEFIEDD ELVEVTPKAI RLRKKYLSEN 
DRKRASRTG