Gene Xfasm12_0452 details

Gene Information

• Locus tag: Xfasm12_0452
• Symbol: carB
• ID: 6119515
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Xylella fastidiosa M12
• Kingdom: Bacteria
• Replicon accession: NC_010513
• Strand: +
• Start bp: 497145
• End bp: 500387
• Gene Length: 3243 bp
• Protein Length: 1080 aa
• Translation table: 11
• GC content: 54%
• IMG OID: 641648522
• Product: carbamoyl phosphate synthase large subunit
• Protein accession: YP_001775093
• Protein GI: 170729660
• COG category: [E] Amino acid transport and metabolism; [F] Nucleotide transport and metabolism
• COG ID: [COG0458] Carbamoylphosphate synthase large subunit (split gene in MJ)
• TIGRFAM ID: [TIGR01369] carbamoyl-phosphate synthase, large subunit; [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type

Plasmid Coverage information

• Num covering plasmid clones: 16
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCAAAGC GTACTGACCT TCGTACCATA CTTATCATCG GTGCTGGCCC GATTGTTATC 
GGTCAGGCTT GTGAGTTTGA CTATTCTGGT GCCCAAGCCT GTAAGGCGTT GCGTGCGGAA 
GGCTTCCGTG TCGTCTTGGT GAACAGTAAC CCGGCGACGA TTATGACCGA TCCTGATATG 
GCCGACGCTG TGTATATCGA ACCGATTCAC TGGCGGACGG TTGAGAAGAT CATCACCAAA 
GAGAAGCCAG ATGCGCTGTT GCCAACGATG GGTGGTCAGA CGGCTTTGAA CTGCGCTTTG 
GACTTGGCCG ATCACGGTGT GCTGGAGAAA TATGGTGTCG AGTTGATCGG AGCCAAGCGC 
GAGGCGATCC GTATGGCTGA GGATCGTGAG TTGTTTCGTG TGGCGATGCA GGAGATCGGC 
TTGGAGTGTC CGAAGGCCGA AGTGGCTAAA AGTTTGGAGC GAGCTTTGGA GATCCAGGCC 
AAAGTCGGTT TTCCGACGAT CATCCGACCG AGCTTCACCC TGGGCGGTAC CGGAGGGGGG 
ATTGCTTACA ATCGCCAGGA GTTCGAGGAA ATTATCAAGC GCGGTCTGGA GCTTTCCCCA 
GTACATGAGG TGCTGGTGGA GGAGTCCGTC CTAGGCTGGA AAGAGTTTGA GATGGAGGTG 
GTTCGTGACG CCTCGGACAA TTGCATCATT GTCTGTTCAA TCGAGAACTT GGATCCGATG 
GGGGTACATA CCGGGGATTC GATCACGGTT GCTCCGGCGC AGACATTGAG TGATAAGGAG 
TATCAGCGTT TGCGTGATGC TTCGATTGCG GTACTGCGTA AGATCGGTGT GGATACTGGT 
GGTTCGAATG TACAGTTTGG TATTGATCCG CAGACCGGCC GTGTGGTGGT GATTGAGATG 
AATCCGCGCG TGTCGCGTTC TTCAGCGTTG GCTTCCAAAG CGACTGGTTT CCCAATCGCT 
AAGATTGCGG CAAAACTGGC GGTGGGCTAC ACCCTTGATG AGCTTAAGAA CGAGATTACC 
GGCGGTAAAA CGCCTGCTTC GTTTGAGCCA TCCATTGATT ACGTGGTGAC TAAAATCCCG 
CGTTTTGCTT TCGAGAAGTT TCCGCAAGCG GATGCACGTC TGACTACGCA GATGAAATCT 
GTGGGTGAGG TGATGGCAAT GGGGCGGACC TTTGCAGAGT CGTTGCAGAA GGCGGTGCGT 
GGGCTGGAGA CCGGCAAGGT TGGCTTGGAG CCGACTGGTT TGGATTTGAG CAGCGAAGAT 
GATTTGGTTG TCCTCAAGCG TGAGTTGAAA GCACCGGGGG CCGAGCGGCT ATTTTATGTA 
GCCGATGCAT TTCGTGCTGG GTTCGCAGTC GCTGATGTTT ACGCGTTGTC TTATATCGAC 
CCATGGTTTT TGGATCAGAT TGAGGAGATT GTTGCTGCTG AGGGCCGACT GGTTACCGAT 
GGTCTTGGTT CGATAGATGG GGCACGCTTA CGTCAGCTCA AGCGTATAGG TTTCTCTGAT 
GCGCGTATCG CGCAGTTAAC CGGCACGAAT GAGGTTGCGG TGCGGACGTT GCGCCGTGTG 
CTCAAGGTCA AGCCGGTATA TAAGCGTGTC GATTCTTGCG CTGGTGAGTT TGCCACTGGC 
ACTGCTTACC TGTACTCAAC ATATGAGGAA GAGTGTGAGG CTGCGCCGAG TGATCGCCGC 
AAAATTATGA TCTTGGGGGG GGGGCCGAAT CGCATTGGCC AAGGCATTGA GTTTGATTAC 
TGTTGCGTCC ATGCCGCTTT GGCGTTACGT GAGGATGGGT TTGAAACCAT CATGGTCAAC 
TGTAATCCGG AGACGGTATC TACGGATTAC GATACCTCTG ACCGCCTTTA CTTTGAGCCA 
TTGACGTTAG AGGACGTGTT AGAAATCGTT GAGGTCGAAC ACCCTGTTGG AGTGATCGTA 
CAGTACGGTG GACAGACTCC TCTGAAGCTG GCTAAAGCGT TGGAAGCCAA CGGTGTGCCG 
GTGATCGGCA CCTCTCCGGA ATCGATTGAC TTGGCCGAGG ACCGTGAACG TTTCCAGAGG 
CTGGTTCAGC AACTTGGTTT GAGGCAGCCG CCAAACTGTA CGGCGCGTAC CGCTGACGAG 
GCATTGGTAT TGGCCCGTGA GATTGGTTAT CCCCTGGTGG TCCGTCCGAG TTATGTGCTT 
GGTGGCCGTG CGATGGAGAT TGTCTACAGT GAGGCCGATT TGGCGCGTTA TGTGCGTGAT 
GCGGTGAAGG TATCCAACGA TTCGCCCGTG TTGCTTGATC GTTTCCTTGA CAATGCGGTT 
GAGGTCGATG TGGACATCAT TGCTGATCCG GAGGGTCAGG TACTGATCGG TGGAGTGATG 
GAGCACATTG AGGAGGCTGG TGTCCACTCA GGTGACTCCT CATGTTCCTT GCCGCCCTAT 
TCGTTATCGG CCGCGACTCA GGACGATTTA CGTCGCCAAG TCATCAGGTT GGCGCAGGCA 
TTGAACGTCA TTGGTTTGAT GAATACACAG TTTGCGATCC AATCCAATGA TGATGGTAGT 
GACATCGTAT ATTTGCTGGA AGTCAATCCA CGTGCTTCGC GCACCGTGCC GTTCGTCTCT 
AAAGCGACGG GGGTGCCGCT TGCCAAGATT GCCGCGCGTT GTATGACTGG CAAGACATTG 
GCCGAGCAAA GTGTGACTTG TGAGGTTGTA CCGGCATATT ATGCGGTGAA GGAAGCGATC 
TTTCCGTTTG CTAAACTACA GGGCGTGGAC CCGATTCTCG GTCCGGAAAT GCGTTCTACA 
GGTGAAGTGA TGGGGGTGGG CCGTAGTTTT GCCGCAGCGT TCGCCCGCGC GCAGGAAGCC 
GGCGATATCC GTGCCCCGCA ACCAGGCAGG GCGTTTGTTT CGGTGCGTGA TCCTGATAAA 
AAGCGTGTGT TGCCAGTTGT CTTGGCCTTG GTGGAGCGCG GCTTCGGTGT GGTTGCTACT 
GCTGGTACTT ATGCTTGGTT GCAGCAGAAT GGAGTGGCCT GTGAGGTTGT GAATAAAGTG 
GCCGAAGGGC GTCCGCACAT CGTCGACTTG ATTAAGAACG GCGAGATTGT TTACATCATC 
AATACTACGG AAGGGCGTGC GGCGATTGCC GACTCTTTCT CAATCCGTCG GGAGGCACTG 
CAACATTGTG TGACCTACTC GACTACTATT GCTGGCGCTA AGGCGTTGGT GAATTCACTC 
GAGTTCCGCG GTACCGGTCC GGTTTGGTCG CTACAGGAAC TCCACAAGGA GCTGCAGGTA 
TGA 

 

Protein sequence

MPKRTDLRTI LIIGAGPIVI GQACEFDYSG AQACKALRAE GFRVVLVNSN PATIMTDPDM 
ADAVYIEPIH WRTVEKIITK EKPDALLPTM GGQTALNCAL DLADHGVLEK YGVELIGAKR 
EAIRMAEDRE LFRVAMQEIG LECPKAEVAK SLERALEIQA KVGFPTIIRP SFTLGGTGGG 
IAYNRQEFEE IIKRGLELSP VHEVLVEESV LGWKEFEMEV VRDASDNCII VCSIENLDPM 
GVHTGDSITV APAQTLSDKE YQRLRDASIA VLRKIGVDTG GSNVQFGIDP QTGRVVVIEM 
NPRVSRSSAL ASKATGFPIA KIAAKLAVGY TLDELKNEIT GGKTPASFEP SIDYVVTKIP 
RFAFEKFPQA DARLTTQMKS VGEVMAMGRT FAESLQKAVR GLETGKVGLE PTGLDLSSED 
DLVVLKRELK APGAERLFYV ADAFRAGFAV ADVYALSYID PWFLDQIEEI VAAEGRLVTD 
GLGSIDGARL RQLKRIGFSD ARIAQLTGTN EVAVRTLRRV LKVKPVYKRV DSCAGEFATG 
TAYLYSTYEE ECEAAPSDRR KIMILGGGPN RIGQGIEFDY CCVHAALALR EDGFETIMVN 
CNPETVSTDY DTSDRLYFEP LTLEDVLEIV EVEHPVGVIV QYGGQTPLKL AKALEANGVP 
VIGTSPESID LAEDRERFQR LVQQLGLRQP PNCTARTADE ALVLAREIGY PLVVRPSYVL 
GGRAMEIVYS EADLARYVRD AVKVSNDSPV LLDRFLDNAV EVDVDIIADP EGQVLIGGVM 
EHIEEAGVHS GDSSCSLPPY SLSAATQDDL RRQVIRLAQA LNVIGLMNTQ FAIQSNDDGS 
DIVYLLEVNP RASRTVPFVS KATGVPLAKI AARCMTGKTL AEQSVTCEVV PAYYAVKEAI 
FPFAKLQGVD PILGPEMRST GEVMGVGRSF AAAFARAQEA GDIRAPQPGR AFVSVRDPDK 
KRVLPVVLAL VERGFGVVAT AGTYAWLQQN GVACEVVNKV AEGRPHIVDL IKNGEIVYII 
NTTEGRAAIA DSFSIRREAL QHCVTYSTTI AGAKALVNSL EFRGTGPVWS LQELHKELQV