| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Xfasm12_0448 |
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| Symbol | |
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| ID | 6119511 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Xylella fastidiosa M12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010513 |
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| Strand | + |
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| Start bp | 491483 |
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| End bp | 494254 |
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| Gene Length | 2772 bp |
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| Protein Length | 923 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 641648518 |
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| Product | DNA polymerase I |
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| Protein accession | YP_001775089 |
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| Protein GI | 170729656 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0258] 5'-3' exonuclease (including N-terminal domain of PolI)
[COG0749] DNA polymerase I - 3'-5' exonuclease and polymerase domains |
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| TIGRFAM ID | [TIGR00593] DNA polymerase I |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.106408 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTAAAT TAGTTTTAAT TGATGGGTCC AGTTACCTTT ATCGTGCGTT TCACGCATTG
CCGCCGCTCA GTAATGCAGC AGGTGAACCT ACCGGTGCGT TGTTCGGTGT GGTCAACATG
TTGCGTACTA CATTGAAGGA GCGCCCGGAC TATGCTGCTT TCGTGATTGA TGCTCCAGGG
AAGACGTTTC GCGATGCTCT TGATTCCGAA TACAAAATGC ATCGTCCGCC TATGCCTGAT
GATTTGCGTA TGCAGGTGGA GCCGATGTGT GGGATTGTGC ATGCGTTAGG TATCGATATT
TTGTGTATCC ATGGGGTGGA GGCTGATGAT GTGATCGGCA CATTAGCTTT AGCTGCCGTT
GCTGATGGGA TTGCGGTGAC AATTTCTACG GGTGATAAGG ACTTCGCTCA GTTGGTGCGT
CCAGGTGTGG AGTTGGTCAA CACAATGACT GGTAGTCGGA TGGACTCGGC TATGGCAGTG
ATCAATAAAT TCGGGGTTGC TCCGGATCAG ATTATTGATT TTTTGGCGTT GATGGGTGAT
TCGGTGGATA ACGTGCCTGG TGTGGATAAA TGCGGGCCGA AGACAGCAGC GAAGTGGTTG
GCTGAGTATG GTTCACTGGA TGCGGTGATT GCCAATGCGG ACAAGATCAA GGGGAAAATT
GGTGACAATC TGCGTGTTGT GCTGCCACGA CTTTTGTTAA ATCGTGCGCT GATTACAATC
AAGACTGATG TGGTATTGGA GAAGCGCCCG CAGGATTTGG CGCTGCGTGA GCGTGATACT
GAAGCGCTGC GTGATTTTTA CCAGCGGTAT GGCTTCACAC AGGCATTGAA GGAACTCGAT
GGTGGTAGCG TTGCAGTCAC TGTGGCTGAG CAGGAACCTG GGCGTGGGCG AGATGCGGGT
TTCCATGTTG CTCCTGATGC ATCGGTGGCA ATGGAGATTA ATCCGGCGTT GTCTGCGCCC
GGAGAGTACG AGACGATTTT CACAGTTGAG CAGTTGCAGG ATTGGATTGT GCGGTTGCGG
GTGGCGGGTC AGTTTGCTTT GGACACTGAA ACCGACAGTC TGGATCCAAT GCAAGCGGTG
CTCATTGGCC TGAGTTTTGC GTCAGAAGTA GGATGTGCTG CTTATTTGCC ATTTGGTCAT
GATTACCCTG GTGCGCCGGT GCAGCTTGAT CGCGGGCAGG CGCTGGCATT ACTGCAACCG
CTGCTGGAAG ATGCTGCGGT GCGCAAGGTG GGTCAGCATG GCAAATATGA TATGCATGTG
CTGCGTCGTT ACGGTATCGT GCTCGCTGGT TATGCCGATG ACACTCTATT AGAAAGTTTT
GTACTTACTT CCGGTCATGC GCGTCACGAT ATGGATACGT TGGCGAGGCG CCACCTCGGT
TACGAGACGA TGAAGTATGT CGATCTGGTG GGTAAGGGAG CTAAGCAGAT TCCTTTTTCG
CATGTGGGGG TTCAAGAGGC CACTCAGTAC GCTGCTGAGG ATGCGGATAT CACGTTGCGC
TTGCACTGTG TGCTGGCGCC CAAGTTGTTG GCCGAGCCAA TTTTGGAGCG GGTCTACCGT
GAAATCGAAA TGCCACTGGT TGCAGTGCTG GAGCGCATTG AGGCCAATGG TGTGCAGATT
GATGCAGAGG AGTTGTATAA GCAGAGTGCT GATTTGTCGC GGCGGATGGT TATTGCGCAG
CAAAAGGCGA TGGACTTGGC AGGGCGTCAC TTCAACTTGG ATTCACCGAA ACAGTTACAG
GTGCTGTTGT TTGATGAGTT GAAGTTGCCA GTCGTGGTGA AGACGCCCAA GGGGCAGCCA
TCGACTAATG AGGAGGCGTT GGAGGCGATT GTTGATCAGC ATGCGTTGCC GCGTGTCATT
CTGGAATATC GCAGCTTGGC CAAGCTGCGC AATACCTACA CTGAGAAGTT GCCGGAGATG
ATCCATCCGC ACACTGGGCG TGTGCATACC AATTACCATC AGGCCGGTGC TGCTACTGGG
CGGTTGTCTT CCTCAGATCC CAATTTGCAG AATATCCCGA TTCGTACGGA TGATGGTCGC
CGTATCCGTC GTGCTTTTGT GGCGCCTTCT GGGCGCAAGT TGATTGCTTG CGATTATTCG
CAGATCGAGT TGAGGATCAT GGCGCATCTT TCAGGGGATG CGGGGCTTGT TGATGCGTTT
GAGTCTGGTG TGGATGTGCA TTGTGCTATC GCTGCGGAGG TGTTCGGTCG TGGAATTGAT
GAGGTGACGC CGAATGAGCG TCGTGCGGCG AAGGCAATCA ATTTTGGCTT GATCTACGGG
ATGAGTGCGT TTGGCTTGGC GCGTCAGCTT GGTATCAGCC GCGGTGAGGC GCAGGATTAC
ATTGCCTTGT ATTTCGATCG TTTTTCTGGG GTGCGTGATT TTATGGAAAA CACGCGTCAG
CAGGCGCGCG ATAGAGGGTA TGTAGAAACG GTGTTTGGAC GCCGTCTGTA TTTGAACTCC
ATTGCCAGCG GTAACCAGAC GCAGCGTGCC GGTGCTGAGC GTGCAGCGAT CAATGCGCCA
ATGCAGGGGA CTGCGGCCGA TATCATCAAG CGTGCCATGG TTGCAGTGGA TGGTTGGTTG
GGAGTGGGAG GGCATCGGGA GCGTGCGCTG ATGATCTTGC AAGTACACGA TGAATTAGTG
TTTGAGGCGG ATGAGGGTTT CGTGCCGACG CTTGTACATG AAGTGTCGGC ACGAATGGCT
GCGGCAGCGC AGTTGCGTGT GCCGTTGGTT GTCGATGTTG GCGTAGGTCA TCACTGGGAT
GAGGCGCACT GA
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| Protein sequence | MSKLVLIDGS SYLYRAFHAL PPLSNAAGEP TGALFGVVNM LRTTLKERPD YAAFVIDAPG
KTFRDALDSE YKMHRPPMPD DLRMQVEPMC GIVHALGIDI LCIHGVEADD VIGTLALAAV
ADGIAVTIST GDKDFAQLVR PGVELVNTMT GSRMDSAMAV INKFGVAPDQ IIDFLALMGD
SVDNVPGVDK CGPKTAAKWL AEYGSLDAVI ANADKIKGKI GDNLRVVLPR LLLNRALITI
KTDVVLEKRP QDLALRERDT EALRDFYQRY GFTQALKELD GGSVAVTVAE QEPGRGRDAG
FHVAPDASVA MEINPALSAP GEYETIFTVE QLQDWIVRLR VAGQFALDTE TDSLDPMQAV
LIGLSFASEV GCAAYLPFGH DYPGAPVQLD RGQALALLQP LLEDAAVRKV GQHGKYDMHV
LRRYGIVLAG YADDTLLESF VLTSGHARHD MDTLARRHLG YETMKYVDLV GKGAKQIPFS
HVGVQEATQY AAEDADITLR LHCVLAPKLL AEPILERVYR EIEMPLVAVL ERIEANGVQI
DAEELYKQSA DLSRRMVIAQ QKAMDLAGRH FNLDSPKQLQ VLLFDELKLP VVVKTPKGQP
STNEEALEAI VDQHALPRVI LEYRSLAKLR NTYTEKLPEM IHPHTGRVHT NYHQAGAATG
RLSSSDPNLQ NIPIRTDDGR RIRRAFVAPS GRKLIACDYS QIELRIMAHL SGDAGLVDAF
ESGVDVHCAI AAEVFGRGID EVTPNERRAA KAINFGLIYG MSAFGLARQL GISRGEAQDY
IALYFDRFSG VRDFMENTRQ QARDRGYVET VFGRRLYLNS IASGNQTQRA GAERAAINAP
MQGTAADIIK RAMVAVDGWL GVGGHRERAL MILQVHDELV FEADEGFVPT LVHEVSARMA
AAAQLRVPLV VDVGVGHHWD EAH
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