| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Xfasm12_0202 |
|---|
| Symbol | nusA |
|---|
| ID | 6119704 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xylella fastidiosa M12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010513 |
|---|
| Strand | + |
|---|
| Start bp | 241518 |
|---|
| End bp | 243029 |
|---|
| Gene Length | 1512 bp |
|---|
| Protein Length | 503 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 641648289 |
|---|
| Product | transcription elongation factor NusA |
|---|
| Protein accession | YP_001774865 |
|---|
| Protein GI | 170729432 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0195] Transcription elongation factor |
|---|
| TIGRFAM ID | [TIGR01953] transcription termination factor NusA
[TIGR01954] transcription termination factor NusA, C-terminal duplication |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.504361 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAAGG AACTTTTATT GGTAGTTGAT GTGGTCGCTA ACGAAAAGGG TGTTCCACGC
CAGATCATCT TTGATGCCAT TGAGGTTGCG TTGGCGTCGG CGGCGAAGAA GCGCTATCAA
GATCGTGACA TTCTAACGCG TGTCACTATC GATCAAAAGA ACGGCAACTA TGAGACTTAC
CGCCGTTGGG AGGTTGTCGC TGATGATGTG GTGATGGAAT CGCCTGAACG CCAGATTCGT
CTCATGGATG CGCTTGATGA AGCTGATGGT GTAGAGGTTG GTGATTACAT TGAAGAGCAG
ATTGAGAATC CGGATTTTGG CCGTATCTCT GCACAGGCCG CTAAACAAGT GATTGTGCAA
CGTGTGCGTG AGGCTGAACG TCAGCAGGTT GTTGATGCGT GGAAAAATCG TGTTGGCGAG
TTAGTAACTG GCGTAGTCAA GCGTGTTGAA CGCGGTAATA TTTATGTCGA TTTAGGTGGA
GGTACGGAGG CTTTTATCCC TAAGGACAAG GGTATCCCGC GAGATGTAAT ACGTCCTGGA
GATCGTGTGC GTGGTTACTT GGCTGAGGTG CGTTCTGAGT CACGTGGCCC GCAGCTCTTC
ATTAGTCGCT CTGCTCCAGA ATTTATGATC GAATTGTTTA AATTGGAAGT CCCTGAGGTT
GGTCAGGGTT TGGTCGAGAT CAAAGGGTGT GCCCGTGATC CTGGTGACAG GGCAAAAATT
GCCGTGATTG CGCATGATAA TCGCACTGAT CCGATCGGTG CTTGCATAGG TATGCGTGGA
TCGCGTGTGC AGGCTGTCTC CAACGAACTC AACGGCGAGC GTGTAGATAT TGTATTGTGG
AACGAAAATC CGGCTAACTT TGTTATCAAT GCGATGGCTC CCGCTGAGGT GCAGTCGATC
ATTGTTGATG AGGAGAGGCA CTCGATGGAT TTAGCTGTTG CTGAGGATCG TTTGGCCCAG
GCGATTGGTA AAGGCGGCCA GAATGTACGT TTGGCCAGTC GCTTGACGGG TTGGCAATTG
AATGTGATGA CCGCCGAACA GGTTGCTGCC AAGTCGGAAG CCGAGCAGGT TGCCGCCCGT
CGACTGTTTA TGGACCGCTT GGAAGTGGAT GAGGAGATTG CATCCATTCT GGTTATGGAG
GGATTTAACA CTATAGAGGA AATCGCTTAT GTTCCTGTCG GTGAGCTCCT GGCAGTGGAA
GGTTTCGATG AGGATATTGT TGAGGAGCTC CGTGCTCGGG CACGTGATGC GTTACTGAAT
GCAGCCTTGG CCGAAGAGGA GGTTTTGGAA CATTCTGGTC CAGCGCCGGA TTTATTGGAG
CTCAATGGTA TGGACGAGAT CACTGCGCAC GCGCTTGCTG CTCATGGAGT GCGTACTAGC
GAGGACCTTT CAGATTTGGC TGCTGACGAG ATCGTCGAGT TTGATATTCA AGGCATGACC
GTACAGCGTG CAGCTGTATT GATACTTGCT GCTCGTGCCG AGGAAATTGC TCGTTTGGAG
CGTGGCGAAT GA
|
|---|
| Protein sequence | MSKELLLVVD VVANEKGVPR QIIFDAIEVA LASAAKKRYQ DRDILTRVTI DQKNGNYETY
RRWEVVADDV VMESPERQIR LMDALDEADG VEVGDYIEEQ IENPDFGRIS AQAAKQVIVQ
RVREAERQQV VDAWKNRVGE LVTGVVKRVE RGNIYVDLGG GTEAFIPKDK GIPRDVIRPG
DRVRGYLAEV RSESRGPQLF ISRSAPEFMI ELFKLEVPEV GQGLVEIKGC ARDPGDRAKI
AVIAHDNRTD PIGACIGMRG SRVQAVSNEL NGERVDIVLW NENPANFVIN AMAPAEVQSI
IVDEERHSMD LAVAEDRLAQ AIGKGGQNVR LASRLTGWQL NVMTAEQVAA KSEAEQVAAR
RLFMDRLEVD EEIASILVME GFNTIEEIAY VPVGELLAVE GFDEDIVEEL RARARDALLN
AALAEEEVLE HSGPAPDLLE LNGMDEITAH ALAAHGVRTS EDLSDLAADE IVEFDIQGMT
VQRAAVLILA ARAEEIARLE RGE
|
|---|
| |