| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Xfasm12_0177 |
|---|
| Symbol | |
|---|
| ID | 6121167 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xylella fastidiosa M12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010513 |
|---|
| Strand | + |
|---|
| Start bp | 213635 |
|---|
| End bp | 214306 |
|---|
| Gene Length | 672 bp |
|---|
| Protein Length | 223 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 641648264 |
|---|
| Product | ribulose-phosphate 3-epimerase |
|---|
| Protein accession | YP_001774843 |
|---|
| Protein GI | 170729410 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0036] Pentose-5-phosphate-3-epimerase |
|---|
| TIGRFAM ID | [TIGR01163] ribulose-phosphate 3-epimerase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 0.165855 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCCAATT GTCTGATTGC TCCATCCATT CTTTCCGCTG ACTTTGCCCG TCTTGGAGCT
GAGGTGGATG CTGTACTTGC GGCGGGTGCC GATTGGATCC ATTTCGATGT GATGGATAAT
CATTACGTAC CGAATTTGAC CTTTGGTCCG ATGGTGTGCA AGGCGTTGCG TAGTTACGGC
ATCACTGCGC CAATTGATGT GCATTTGATG GTGGAGCCAG TAGACCGGAT CGTGCCGGAT
TTTGCTCAGG CCGGTGCCAG CATGATCAGC TTTCATATCG AAGCCAGCCG TCATGTGCAC
CGTACTATTC AGCTCATCAA GTCCCATGGT TGCATGGCTG GCTTAGTATT TAATCCGGCG
ACACCGGTCG ATATGTTGGA TTGGGTGCTT CCTGAATTGG ATCTCGTCCT GTTGATGTCT
GTCAATCCCG GTTTTGGTGG TCAGAGGTTC ATTCCTGGGA CGCTGGATAA GCTGCGCTTG
GTGCGTAAAA AGATTGATCT GCTTGGTAGG CCTGTGCGAT TGGAGGTTGA TGGAGGGGTC
GGCATTGACA ATATTGGCGC GATTGCTGAG GCCGGCGCTG ATACCTTTGT TGCCGGTTCG
GCGATCTTCC ATGCACGTGA CTATGGTGAT GTGATCGCTC AGATGCGTGC AGTGGTTGCG
GCGGTTAGGT GA
|
|---|
| Protein sequence | MSNCLIAPSI LSADFARLGA EVDAVLAAGA DWIHFDVMDN HYVPNLTFGP MVCKALRSYG
ITAPIDVHLM VEPVDRIVPD FAQAGASMIS FHIEASRHVH RTIQLIKSHG CMAGLVFNPA
TPVDMLDWVL PELDLVLLMS VNPGFGGQRF IPGTLDKLRL VRKKIDLLGR PVRLEVDGGV
GIDNIGAIAE AGADTFVAGS AIFHARDYGD VIAQMRAVVA AVR
|
|---|
| |