Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Xfasm12_0120 |
Symbol | |
ID | 6119831 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Xylella fastidiosa M12 |
Kingdom | Bacteria |
Replicon accession | NC_010513 |
Strand | - |
Start bp | 142447 |
End bp | 143304 |
Gene Length | 858 bp |
Protein Length | 285 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 641648205 |
Product | spermidine synthase |
Protein accession | YP_001774789 |
Protein GI | 170729356 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0421] Spermidine synthase |
TIGRFAM ID | [TIGR00417] spermidine synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.0292397 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACCACCA AAGACACCTG GTTCACCGAA CATTTCCAAG CAACCGGCTC AGCGATCGGC TTCCGCGTCA CTGGCAAACT AGATGAAGTG CAATCACCAT TCCAGAAAAT CGAAATCTAC AACAGCACCG ACTGGGGCAA ACTCATGGTG ATCGACGGCG CATTAATGCT CACCAGTAGA GACAACTTCA TCTATCACGA AATGATCAGC CATCCAGCAC TATTCACCCA CACCGCCCCA AAGTGCGTGG TGATTATCGG CGGCGGCGAC TGCGGGACAC TGCGCGAAGT CCTCAAACAC CCAGACATAG AACAAGTCAC CCAATGCGAT ATTGATGAAC AAGTCACACG CATGGCGGAA AAACATTTCC CTGAACTATG CACCTCCAAC AACGACCCAC GCGCCACACT GCTGTTCAGC GACGGCGTGG CTTATATGGC CGATTGCCCA ACCAACAGCG TGGATGTGAT TATCGTCGAC TCAACCGACC CCATCGGCCC AGCCAAAGGC TTATTCAACA GAACCTTCTA TGAAAGCTGT TTCCGCGCCC TAAAAAATGA TGGATTACTC ATACAACAAT CCGAATCACC ATTGGCGCTA CTAGAACTCA TCAAAGAAAT GCGCCATGAA ATGAGCAAAG CCGGCTTCAA AGCATTCAAG ACCCTACCGT TTCCACAACC TTGCTATCCC ACCGGCTGGT GGAGCGTCAC CCTATCCAGC AAACAACCCA ACGCGAACTT TGCATTTCGC CAAACCGACG CCCAAACCAA ACCCTTCGAC ACACTGTACT ACAACGCACA CCTGCATCAT GGTGTACTCG CCCCCCCCCC CTTCATCGCA CACGCATTAG GCGAGTAA
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Protein sequence | MTTKDTWFTE HFQATGSAIG FRVTGKLDEV QSPFQKIEIY NSTDWGKLMV IDGALMLTSR DNFIYHEMIS HPALFTHTAP KCVVIIGGGD CGTLREVLKH PDIEQVTQCD IDEQVTRMAE KHFPELCTSN NDPRATLLFS DGVAYMADCP TNSVDVIIVD STDPIGPAKG LFNRTFYESC FRALKNDGLL IQQSESPLAL LELIKEMRHE MSKAGFKAFK TLPFPQPCYP TGWWSVTLSS KQPNANFAFR QTDAQTKPFD TLYYNAHLHH GVLAPPPFIA HALGE
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