| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Xfasm12_0093 |
|---|
| Symbol | dapD |
|---|
| ID | 6119803 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xylella fastidiosa M12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010513 |
|---|
| Strand | + |
|---|
| Start bp | 108469 |
|---|
| End bp | 109371 |
|---|
| Gene Length | 903 bp |
|---|
| Protein Length | 300 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 641648178 |
|---|
| Product | 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase |
|---|
| Protein accession | YP_001774763 |
|---|
| Protein GI | 170729330 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2171] Tetrahydrodipicolinate N-succinyltransferase |
|---|
| TIGRFAM ID | [TIGR00965] 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 0.805943 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACAACCC AATCCCACCT TAAGGAAACC CCACTGCAAC AGGTGGATAA CAAGGCACCC
CCTCCTGTTG TGGATAAGGC ACTTGTTAGT GCGATTGAAG ATGCCTTCGC GCGTTACTCC
ACACTGACCG TGGAAGAGAT CGAAGATTCA ATCCGCCCAA CCGTTAACAG AGTGATCGAC
GGCCTGGAAA CTGGCGCGTT TCGTGTTGCT GAGCCGGATA ATCACGGTGG CTGGAAGGTT
AACGAGTGGC TGAAGAAAGC CGTATTGCTG TACTTCCGTG TCCATGACAC CACGATCGTT
GATGCTCAAC CCGCTCCCTT CTGGGACAAA GTTGAATCAC GCTTCTCTGG TTACGATGCA
GTGAAATTCC GCGCTGCCGG AGTGCGTGTC GTCCCAGGTG CGATTGCACG ACGCGGTAGC
TACTTTGGTA AAGATGTCGT GCTGATGCCA AGCTTCACCA ACATTGGTGC TTATGTGGGT
GAAGGCACCA TGATCGACAC CTGGGCAACC GTTGGTTCCT GTGCACAGCT TGGCGCCCAC
TGCCATCTTT CTGGCGGTGC GGCGATTGGT GGCGTACTCG AACCATTGCA AGCCAGCCCC
GCCATCATTG AAGACCATTG CTTCATCGGT GCCCGCTCAG AAGTCGTGGA GGGGGTGATT
GTGGGCCACC ATAGCGTGAT CGGCATGGGC GTCTTTATTA GCCAGAGTAC CCGCATTTAC
AACCGTGCCA CCGGTGAAAT CAGCTATGGT TACGTCCCCC CGTACAGCGT TGTGGTCTCT
GGGCAACTCC CCGCCAAAGA TGGAACCCAC TCCCTGTACT GCGCCGTGAT TGTCAAGCAA
GTCGACGAAA AAACACGTGC TAAAACCAGT ATCAATGAAT TGTTGCGTGG CTTCGCTGAT
TGA
|
|---|
| Protein sequence | MTTQSHLKET PLQQVDNKAP PPVVDKALVS AIEDAFARYS TLTVEEIEDS IRPTVNRVID
GLETGAFRVA EPDNHGGWKV NEWLKKAVLL YFRVHDTTIV DAQPAPFWDK VESRFSGYDA
VKFRAAGVRV VPGAIARRGS YFGKDVVLMP SFTNIGAYVG EGTMIDTWAT VGSCAQLGAH
CHLSGGAAIG GVLEPLQASP AIIEDHCFIG ARSEVVEGVI VGHHSVIGMG VFISQSTRIY
NRATGEISYG YVPPYSVVVS GQLPAKDGTH SLYCAVIVKQ VDEKTRAKTS INELLRGFAD
|
|---|
| |