Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Xfasm12_0093 |
Symbol | dapD |
ID | 6119803 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Xylella fastidiosa M12 |
Kingdom | Bacteria |
Replicon accession | NC_010513 |
Strand | + |
Start bp | 108469 |
End bp | 109371 |
Gene Length | 903 bp |
Protein Length | 300 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 641648178 |
Product | 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase |
Protein accession | YP_001774763 |
Protein GI | 170729330 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG2171] Tetrahydrodipicolinate N-succinyltransferase |
TIGRFAM ID | [TIGR00965] 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 0.805943 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACAACCC AATCCCACCT TAAGGAAACC CCACTGCAAC AGGTGGATAA CAAGGCACCC CCTCCTGTTG TGGATAAGGC ACTTGTTAGT GCGATTGAAG ATGCCTTCGC GCGTTACTCC ACACTGACCG TGGAAGAGAT CGAAGATTCA ATCCGCCCAA CCGTTAACAG AGTGATCGAC GGCCTGGAAA CTGGCGCGTT TCGTGTTGCT GAGCCGGATA ATCACGGTGG CTGGAAGGTT AACGAGTGGC TGAAGAAAGC CGTATTGCTG TACTTCCGTG TCCATGACAC CACGATCGTT GATGCTCAAC CCGCTCCCTT CTGGGACAAA GTTGAATCAC GCTTCTCTGG TTACGATGCA GTGAAATTCC GCGCTGCCGG AGTGCGTGTC GTCCCAGGTG CGATTGCACG ACGCGGTAGC TACTTTGGTA AAGATGTCGT GCTGATGCCA AGCTTCACCA ACATTGGTGC TTATGTGGGT GAAGGCACCA TGATCGACAC CTGGGCAACC GTTGGTTCCT GTGCACAGCT TGGCGCCCAC TGCCATCTTT CTGGCGGTGC GGCGATTGGT GGCGTACTCG AACCATTGCA AGCCAGCCCC GCCATCATTG AAGACCATTG CTTCATCGGT GCCCGCTCAG AAGTCGTGGA GGGGGTGATT GTGGGCCACC ATAGCGTGAT CGGCATGGGC GTCTTTATTA GCCAGAGTAC CCGCATTTAC AACCGTGCCA CCGGTGAAAT CAGCTATGGT TACGTCCCCC CGTACAGCGT TGTGGTCTCT GGGCAACTCC CCGCCAAAGA TGGAACCCAC TCCCTGTACT GCGCCGTGAT TGTCAAGCAA GTCGACGAAA AAACACGTGC TAAAACCAGT ATCAATGAAT TGTTGCGTGG CTTCGCTGAT TGA
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Protein sequence | MTTQSHLKET PLQQVDNKAP PPVVDKALVS AIEDAFARYS TLTVEEIEDS IRPTVNRVID GLETGAFRVA EPDNHGGWKV NEWLKKAVLL YFRVHDTTIV DAQPAPFWDK VESRFSGYDA VKFRAAGVRV VPGAIARRGS YFGKDVVLMP SFTNIGAYVG EGTMIDTWAT VGSCAQLGAH CHLSGGAAIG GVLEPLQASP AIIEDHCFIG ARSEVVEGVI VGHHSVIGMG VFISQSTRIY NRATGEISYG YVPPYSVVVS GQLPAKDGTH SLYCAVIVKQ VDEKTRAKTS INELLRGFAD
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