| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Xfasm12_0040 |
|---|
| Symbol | |
|---|
| ID | 6121518 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xylella fastidiosa M12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010513 |
|---|
| Strand | + |
|---|
| Start bp | 43545 |
|---|
| End bp | 44279 |
|---|
| Gene Length | 735 bp |
|---|
| Protein Length | 244 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 641648127 |
|---|
| Product | 3-dehydroquinate dehydratase |
|---|
| Protein accession | YP_001774718 |
|---|
| Protein GI | 170729285 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0757] 3-dehydroquinate dehydratase II |
|---|
| TIGRFAM ID | [TIGR01088] 3-dehydroquinate dehydratase, type II |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 34 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGCATGCAA TACTTCCTTG CTTTGGCGAG ATTCCTGAAT CGATCAATGA CTATAGGGAG
TATGACTGTG AGGGGCATAG GAAGCATTCA CGTTGGATAG ATACCATCGG TGCTTCCTTT
TGTTCCGAAG ATTCAGTGAG CGATGCATCG TTAGAGGGCA GCACCGCATC ATCTATCAGC
GGATTTCGAA CATACATACC TTGGCCCATC TGGACACTAT CACTGTCTTC GCGCAGACTC
GCCGCCTTGA GACTTTTAGG GTATCGAGTG CCCTTGGATT CCAATAGCAT GGCTCATTTG
CTGCTGTTAC ATGGCCCTAA TTTGAATTTG CTTGGTACCC GTGAACCTGA GATCTACGGC
CGTATCACGT TGCCGCAGAT TGATGCGGCC TTAGCCGAAC GCGCTGCGGC TGCTGGTCAC
GGACTGAGTA GTTTGCAATC GAATGCCGAG CATGTGTTGA TTGAACGTAT TCATGCCACG
CGGGAGGATG GCACTGCGTT TATCTTGATA AATCCTGGGG CGTTTACCCA TACCTCAGTG
GCATTGCGTG ATGCGCTGCT TGCAGTAGCG CTCCCGTTCG TCGAAATTCA CCTTTCTAAC
CCGCATACAC GTGAGCCGTT CCGCCATCAC AGCTATCTGG CTGACAAAGC CTTGGGCGTG
GTGTGTGGTT TTGGGGTGGA CAGTTACCGT ATTGCTTTGG AGGGAGTGAT TGCCAGACTC
GGTTCTGACG TCTGA
|
|---|
| Protein sequence | MHAILPCFGE IPESINDYRE YDCEGHRKHS RWIDTIGASF CSEDSVSDAS LEGSTASSIS
GFRTYIPWPI WTLSLSSRRL AALRLLGYRV PLDSNSMAHL LLLHGPNLNL LGTREPEIYG
RITLPQIDAA LAERAAAAGH GLSSLQSNAE HVLIERIHAT REDGTAFILI NPGAFTHTSV
ALRDALLAVA LPFVEIHLSN PHTREPFRHH SYLADKALGV VCGFGVDSYR IALEGVIARL
GSDV
|
|---|
| |