| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Xfasm12_0039 |
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| Symbol | |
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| ID | 6121517 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Xylella fastidiosa M12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010513 |
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| Strand | + |
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| Start bp | 39630 |
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| End bp | 43211 |
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| Gene Length | 3582 bp |
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| Protein Length | 1193 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 641648126 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_001774717 |
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| Protein GI | 170729284 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCACCAT TCTCCTTTCC CTCTCCGCTG CTGCCCCGTG CCGGGCAGCT CCGTGCATTT
TGGCGTGCTC CGGTCTCTCC AACGGCGCTT GCTTGGCATA TCGCTTGTGC TGCTGAGGCA
CACAGGGGAC CATTGCTGTT GGTCACGCAT GACAATCACA GTGCGCACCA GGTTGAGGTT
GACCTACAGA CTCTATTGGC GCATTGCCCA GGGTTGCCGG TCATTGGTTT CCCGGATTGG
GAGACGCTTC CTTACGACCA ATTCAGCCCT GATCCGAATA TTGTCAGCCA GCGTTTGGCG
ACGTTGCATC GGTTGCCTTC ATTAGCACGC GGTATTGTCG TCGTGCCGGT ACAGACGTTG
ATGCAGCAGT TGGCACCGTT GAGTTACATC GTTGGTGGCA GCTTTGATTT TAAGGTGGGG
CAACGCTTGA TTCTGGATGC TGAGAAGCAG CGGTTGGAGC GGGCGGGTTA CCGCAATGTG
CCGCAGGTGA TGGACCCCGG GGATTTTACG GTGCGTGGGG GGCTGCTTGA TGTTTATCCG
ATGGGTACGG ATGTACCGCT GCGAATCGAA CTATTGGATG AGGAGATTGA TTCAATCCGT
ACGTTCGATC CCGAATCGCA GTGTTCGTTA AATCAGGTCG ATGTCGTTCA TATGCTGCCC
GGCCGCGAAG TACCGTTGGA TCCTGCGGTG CTTGAACGCG TTTTGGTGCG GTTGCGTGAG
CGTTTCGATC TGGATACTCG GCGCAGTGCG TTGTATCAGG ATTTGAAAGC CGGGTTAGCT
CCGTCTGGGA TCGAGTACTA TTTGCCGCTT TTTTTTGAGT CGGGGCGTGG TGGGAAACAC
GCGACCGCGA CGCTTTTTGA TTATTTGAGT GCAGATTTAT TGGTGTTAAC TGCACCGGGT
GTCTCTAACG CTGCCGATAC GTTCTGGGGG CAGACGATGC AACGTTATGA GCAACGTCGC
CACGATATTG AGCGCCCGTT GTTACCGCCG CAGGAGCTAT ACCAGTCCCC GGATGCGTTG
CGTGAACGCT TGAACCGTTT GCCGCGCATT GAGGTTTGGT CGGCCGAACA TGCGCATATC
GATAAAGCAG AGGTATTGGA TGAGCAGCCA TTGCCGGTGG CGACTAAGGA TGTTTCCGTT
GGACAGGCAT TGAGAACTTT CCTTGCTGAT TACGCTGGCC GCGTGTTGAT TGCTGCTACG
TCGCCTGGTC GTCGTGAGGT GCTGCTTGAA TTGCTGGCCA CCGCCGATCT GCAACCGGAG
GTATTGCCTG ACTTTAGGTC GTTTTTTCTC TCTGTGCCCG AAGTGAGTGA TTTGGGGGAA
GCCAATCGCG ATAGTGGCAA TGGCGTGTCA GGTTCGAATG ATGCGGCTGC TTTTCACGTC
ATTGCTTCGC AGGGTGGGTC CTTGCCAACG TTCGCGATCA CTGTGGCTCC ATTGGAGGAT
GGGTTTTCTC TCAGTGTGCC GCCTATTGCG GTGCTTACCG AACGTCAATT GTTCCCTGAG
CGGGTTAATC TGGTGCGCCG CAGTCGGCGT GTTGGGCGTG AGCCTGAGGC AATTATTCGT
GATCTGGGTG AGTTGTCCGA GGGTGCCCCT ATCGTGCACG AGGACCACGG GGTCGGTCGT
TACCGCAAAC TGATCACCAT GAACGTCAGT GGTATGCCTG GTGAGTTTGT GGAGATCGAG
TATGCAAAGG GGGACCGTTT ATACGTTCCG GTTGCCCAAT TGCATCTGAT TAGCCGCTAC
TCAGGCGCTT CGCCGGAGAC AGCGCCGCTG CACTCGTTGG GTGGTGAGCA ATGGAGCAAG
GCCAAGCGCA AGGCGGCCGA AAAGGTACGC GATGTGGCTG CGGAGTTGTT GGAAATTCAG
GCGCGGCGTC AGGCGCGTGC AGGCTTGGCT TTGCGCATTG ATCGTACGAT GTATGAACCT
TTTGCAGCGG GTTTCCCATT CGAAGAGACT CCCGATCAGC TTGCAGCGAT TGAGACGACG
CTGCGTGATC TGCAATCCAG TCAGCCGATG GACCGTGTAG TGTGTGGTGA TGTTGGTTTT
GGCAAAACGG AGGTGGCGGT GCGTGCTGCA TTCGCTGCAG CCAGTGCAGG AAAACAGGTT
GCGGTATTGG TGCCGACGAC GTTGCTAGCC GAACAGCACT ATCGAAATTT CCGCGATCGC
TTTGCCGATT ATCCGATTAG AGTCGAAGTG CTTTCGCGCT TCAAAAGCAC TAAAGAAATC
AAGGCCGAGT TGCAGAAGGT CAGTGAAGGC ACCATGGATG TCATTGTCGG CACGCATCGG
TTGTTGCAAC CGGACGTCAA GTTTAAAGAC TTGGGTTTAG TCATTGTCGA CGAGGAACAG
CGTTTCGGGG TGCGTCAGAA GGAGGCGCTG AAGTCGTTAC GTGCGAATGT GCATTTGTTG
ACGCTGACAG CTACGCCCAT CCCGCGCACG CTCAATATGG CAATGGCGGG GTTGCGTGAT
TTGTCGATCA TTGCGACACC ACCGCTGAAT CGGCTGGCGG TGCAGACGTT TATCACTCCT
TGGGATAATG CGCTGTTGCA TGAGGCTTTC CAGCGTGAAC TAGCGCGTGG TGGTCAGTTG
TACTTTCTAC ATAATGATGT GGAGAGTATC GGCAGGATGC AGCGTGATCT GGCCCAACTG
GTGCCGGAAG CGCGTATTGG TATTGCCCAC GGCCAGATGC CCGAACGCGA GTTAGAGCGC
GTCATGCTGG ATTTCCAGAA GCAGCACTTC AACGTGTTGC TGTCTACGAC GATTATCGAA
TCCGGTATTG ATATTCCCAA CGCTAACACC ATCATCATCA ACCGCGCTGA CCGCTTTGGT
TTGGCGCAGT TGCACCAGTT GCGTGGCCGT GTCGGTCGTT CTCACCATCG CGCCTATGCT
TATTTGGTGG TTCCTGACCG GCGCAGCATG ACGGCGGATG CAGAGAAACG CTTGGAGGCG
ATTGCGTCAA TGGACGAGTT GGGTGCGGGC TTTACTTTGG CGACCCATGA TCTGGAAATA
CGTGGCGCTG GTGAGTTGCT CGGTGAAGAT CAAAGCGGGC AGATGGCCGA GGTCGGTTTC
AGCTTATATA CCGAGTTGCT TGAGCGCGCG GTGCGCAGCA TCAAGCAAGG TAAATTGCCA
GACCTTGATG CAGGTCAGGA AGAACGTGGC GCGGAGGTGG ATTTGCACAT ACCCACGTTG
ATCCCAGAGG ATTATTTGCC CGATGTGCAT ACCCGTTTGA CACTCTACAA ACGGATTTCC
ACGGCCCGTG ACAGCAATGC ACTGCGTGAG TTGAATGTGG AAATGATTGA CCGCTTTGGT
GTGCTTCCAG AGACTGCTAA ACATCTGTTC GCAATCGCTG AGTTGAAGTT GCAAGCCACT
GCATTGGGTA TTTCCAAGTT GGAATTGGGG GAAAATGGTG GCCGTATCAT ATTTGGAGCC
AAACCCATCA TTGATCCTAT GGCTGTGATC CAGCTCGTCC AAAAGCAATC CAAACTGTAT
TCGATGGAGG GGCCAAGTAA ATTAAAACTC AAGTTGCCTT TGCCGGAACC GGCCGATCGT
TTCAATGCTG TACGAGGGTT GCTTGCTGCG TTGACACCTT AA
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| Protein sequence | MSPFSFPSPL LPRAGQLRAF WRAPVSPTAL AWHIACAAEA HRGPLLLVTH DNHSAHQVEV
DLQTLLAHCP GLPVIGFPDW ETLPYDQFSP DPNIVSQRLA TLHRLPSLAR GIVVVPVQTL
MQQLAPLSYI VGGSFDFKVG QRLILDAEKQ RLERAGYRNV PQVMDPGDFT VRGGLLDVYP
MGTDVPLRIE LLDEEIDSIR TFDPESQCSL NQVDVVHMLP GREVPLDPAV LERVLVRLRE
RFDLDTRRSA LYQDLKAGLA PSGIEYYLPL FFESGRGGKH ATATLFDYLS ADLLVLTAPG
VSNAADTFWG QTMQRYEQRR HDIERPLLPP QELYQSPDAL RERLNRLPRI EVWSAEHAHI
DKAEVLDEQP LPVATKDVSV GQALRTFLAD YAGRVLIAAT SPGRREVLLE LLATADLQPE
VLPDFRSFFL SVPEVSDLGE ANRDSGNGVS GSNDAAAFHV IASQGGSLPT FAITVAPLED
GFSLSVPPIA VLTERQLFPE RVNLVRRSRR VGREPEAIIR DLGELSEGAP IVHEDHGVGR
YRKLITMNVS GMPGEFVEIE YAKGDRLYVP VAQLHLISRY SGASPETAPL HSLGGEQWSK
AKRKAAEKVR DVAAELLEIQ ARRQARAGLA LRIDRTMYEP FAAGFPFEET PDQLAAIETT
LRDLQSSQPM DRVVCGDVGF GKTEVAVRAA FAAASAGKQV AVLVPTTLLA EQHYRNFRDR
FADYPIRVEV LSRFKSTKEI KAELQKVSEG TMDVIVGTHR LLQPDVKFKD LGLVIVDEEQ
RFGVRQKEAL KSLRANVHLL TLTATPIPRT LNMAMAGLRD LSIIATPPLN RLAVQTFITP
WDNALLHEAF QRELARGGQL YFLHNDVESI GRMQRDLAQL VPEARIGIAH GQMPERELER
VMLDFQKQHF NVLLSTTIIE SGIDIPNANT IIINRADRFG LAQLHQLRGR VGRSHHRAYA
YLVVPDRRSM TADAEKRLEA IASMDELGAG FTLATHDLEI RGAGELLGED QSGQMAEVGF
SLYTELLERA VRSIKQGKLP DLDAGQEERG AEVDLHIPTL IPEDYLPDVH TRLTLYKRIS
TARDSNALRE LNVEMIDRFG VLPETAKHLF AIAELKLQAT ALGISKLELG ENGGRIIFGA
KPIIDPMAVI QLVQKQSKLY SMEGPSKLKL KLPLPEPADR FNAVRGLLAA LTP
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