| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcenmc03_6579 |
|---|
| Symbol | |
|---|
| ID | 6125502 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia cenocepacia MC0-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010512 |
|---|
| Strand | - |
|---|
| Start bp | 638482 |
|---|
| End bp | 639870 |
|---|
| Gene Length | 1389 bp |
|---|
| Protein Length | 462 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 641647592 |
|---|
| Product | amino acid permease-associated region |
|---|
| Protein accession | YP_001774189 |
|---|
| Protein GI | 170735075 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0531] Amino acid transporters |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.0989749 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.00384925 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGGACAACG ACAGGCCAGG TCGAACCGCA TCGGCCGCCG CGACGCATGA CTTCGGCGCG
GATGCGCAGC GCGGCGACAC GGACGCACGC AAGCCGCATC TGCTCGGACT CTCGACGCTG
GTGATCTTCG GCCTCGCCTA CATGCTGCCG ATGACGGTGT TCACGACTTA CGGCCTCGTC
ACGAGCGAAA CGAACGGGCA TCTGACGGCC GCGTACGCGG TCACGCTGAT CGCGATGCTG
TTCACCGCGC GCAGCTACGG CCACATGGCG CGGCTGATGC CGAGCGCCGG GTCGGCCTAT
ACGTTCGCGA GCCGCAACTT CGGTACGTCG GCCGGCTTCA TGGTCGGCTG GGCGTTGCTG
ATGGATTACC TGTTCATCCC GATGATCAGC TACCTCGCGA TCGGCATCTA CATGAAGCAG
ATCTTTCCGG CGGTGCCGGC CAGCGTGTGG ATCGTCGGCA GCATCGCGCT GATCACCGGG
CTGAACATCG TCGGCATCCG GCTCGTCAAT CGCGTGAACC TGATCCTGAT CGCGAGCCAG
CTCGTGTTCA TCGCGGTCTT CGTGATCGCG TCGGCGCACG TCGCGGCCGG CGAAGGGCTG
TCGATGGCCG TCGCGTTGCC GTCGTCCGGC GATGCGCGCG CGATCTTCGC CGGCTCCGCG
ATCCTGTGCC TGTCGTTCCT CGGCTTCGAT GCGGTCACCA CGCTGTCGGA GGAAACGCGC
GAGCCGCGGC GCACGGTGCC GCGCGCCATC CTGCTCTGCA CGCTTGCGAG CGGTCTGCTG
TTCATGCTGA TCGCATATGT CGGGCAACTG GTGTTTCCCG ACTGGCACGC GTTCAAGGAT
CTCGATTCGG CGAGCCTCGA CCTGATGCGG CGAGTCGGCG GCCGCACGCT GTCGGCGTTC
TTCGTGGCGG TGTACGTGGC CGGCTGCTTC GCGAGTGCGA TGGCGGGCCA AGCGAGCGTG
ACGCGCGTGC TGTTCGCGAT GGGCCGCGAC CGCGTGCTGC CCGAATCCGT GTTCGGTCAT
CTGCATGCGC GGCTGCGCAC GCCGGTGCGC GCGACGCTCG CGGTCGGCGT CGTGTCGCTG
TCCGCGCTGT TCATCACGCT CGATCTTGCG TCGACGATGA TCAGTTTCGG CGCGCTCGTC
GCGTTCGCGA TCGTGAACCT GTGCGTGATG CGCAGCTATC TGGGCCGGCC GGAGCATCGC
CACGCCGCGG GCTGGATCGC GTACGGCCTG ATGCCGGCGA TCGGCTTCGC GATGAACGTG
TGGCTCTGGT CGGGGCTGTC GCGCCAGACG TTCTATGTCG GCATCGGCTG GCTCGTGCTC
GGGCTCTGCC AGCTCGTATG GCTGACGCGC GGCTTCACGC GCCCGGCGCC GACGCTGTCG
ATGAATTGA
|
|---|
| Protein sequence | MDNDRPGRTA SAAATHDFGA DAQRGDTDAR KPHLLGLSTL VIFGLAYMLP MTVFTTYGLV
TSETNGHLTA AYAVTLIAML FTARSYGHMA RLMPSAGSAY TFASRNFGTS AGFMVGWALL
MDYLFIPMIS YLAIGIYMKQ IFPAVPASVW IVGSIALITG LNIVGIRLVN RVNLILIASQ
LVFIAVFVIA SAHVAAGEGL SMAVALPSSG DARAIFAGSA ILCLSFLGFD AVTTLSEETR
EPRRTVPRAI LLCTLASGLL FMLIAYVGQL VFPDWHAFKD LDSASLDLMR RVGGRTLSAF
FVAVYVAGCF ASAMAGQASV TRVLFAMGRD RVLPESVFGH LHARLRTPVR ATLAVGVVSL
SALFITLDLA STMISFGALV AFAIVNLCVM RSYLGRPEHR HAAGWIAYGL MPAIGFAMNV
WLWSGLSRQT FYVGIGWLVL GLCQLVWLTR GFTRPAPTLS MN
|
|---|
| |