Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bcenmc03_6476 |
Symbol | |
ID | 6125399 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia cenocepacia MC0-3 |
Kingdom | Bacteria |
Replicon accession | NC_010512 |
Strand | - |
Start bp | 524056 |
End bp | 528696 |
Gene Length | 4641 bp |
Protein Length | 1546 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 641647489 |
Product | YadA domain-containing protein |
Protein accession | YP_001774086 |
Protein GI | 170734972 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG5099] RNA-binding protein of the Puf family, translational repressor |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 0.240563 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACAAGT CGTTCAAGTC GATCTGGAAC GAAGCATTGG GGGCCTGGGT TGCGGCTTCG GAGCTTGACC GGGCACGCGG CAAGCGTGTT GCGTCGTCGA GGCGCGCGCC GGAATGCGCC GCGCACGGAG AAGCCGCGAC GCACGCGGGC ATGCCGTCGG CGCCTTCGGT GCTGAGGCTG GCCGTGCTGA CGGCGACCGC TTGCCTCGGG TTGTTCCATG CGAGTGCGCA TGCGCAATAC GCGCAGGATG GCGGTACCGC GTCGGGCGGC ACGACGGCGA TCTCGATCGG CCTCGGTTCG ACTGCCGCGC AGCAGAATTC CACCGCAGTG GGCAACCTGT CGACGGCGCA GGGTTTGTCG GCCACGGCGC TCGGCCCGGG CGCACATGCG ATGGGCGATG GTTCGACGTC CGTCGGCATC AACTCGCAGG CGACCGGCGT CAACAGTTCG GCGCTCGGTG TGCAGGCGAT CGGTTCCGGC GACTATTCGG TCGCGATCGG CAACCTGTCG AGCGCGACCC AAAGCGGCGC GGTGGCGATG GGCAGCGGCG CGGCGGCGAC CGGCGTTTCC GCGGTGGGGC TGGGCAACAA CGCGCTGGCG TCCGGTCAAT ACGCGGCGGC GGTGGGGCTC GGCGCCAGTG CGGCGGGCGC GCAGAGCGTC TCGCTCGGCT ATGCGTCGCA TGCCACCAAC ACGGGTTCCG TCGCGCTCGG CAACCAGTCG ACCAGTTCGG GCGCGGCCGG CGTGGCCGTC GGCAGCGGTG CGCTGACGAC CGGGAATTCC GGCGTGGCGA TGGGCGTGAA CAGCGGGGCG AAGGGTACCG CGTCGATCGC GATCGGCTGG GGCGGCACCG CGGGCGTACC CGGGTCGGGC ACGCAGTCGC TCGGCACGAG TTCGATCGCG ATGGGCTCGA ATACGAATGC CGGCGCCGAT CAGGCGCTGG CATTCGGCCT GAACGCCAAT GCGTCGGGCG TCAGTTCGAT CGCGATGGGT GTGCAGTCGA CCGCGACCCA GCAGTTCGCG ACCGCGCTCG GCAATCTGTC GCTGGCGACC GGCGTGTCCT CCAGCGCGCT GGGGCCCGGG GCGACGGCAT CGGCCACGAA CGCGACGGCG GTCGGTATCA ACAGCGTAGC GGCGGCGGCG TCGACCGTGG CGATCGGCGA TTCCAACTCG GTTGCCGCGG CGGCGGGTGC GGGCTCGATC GCTGGCGGCA ACAACTCGAA GGTGCTGGGC GGCATCGGCG CCGTCGCGCT CGGCCTGGGC CAGACGGTGA GCGGCAACGG CGCGGTCGCG ATCGGCGATC CGAGCACCGC GATCGGCACC GGCGCGGTCA CGATGGGGTC GAACAACACC GCGAACGGCG ACGGCGCGGT CGCGATCGGC AACACCAACA ACGCGCAGGG CACGGGTTCC CTGGCGCTCG GCAATACATC GACGGCAGCG GCGGCGGGCG CCGTCGCGTT CGGCGCGTCG GCCGTGGCCA ACAACGCAAA CGATGTCGCG CTCGGCTCGG GATCGACGAC GGCCGCGCCG AATCCGACGG CCAGCGCGGT CATCGGCGGC GTCACGTACA ACTTCAACGG CATCAATCCG GCGAGCGTCG TCAGCGTGGG GAATGTCGGC GCCGAGCGCC AGATCACCAA CGTCGCGGCC GGGCGGATCA GTTCGTCGAG TACGGACGCA ATCAACGGCT CGCAACTCGC CGCGACGAAC ACGGCAGTCG ATTCATTGTC GACGTCGACG GCGTCGAGCA TCACGTCGTT GTCGACCGGG GTTTCATCGC TGTCGACCGG TCTGAGTTCG ACCAATAGCG CGGTGACGTC GCTATCGACT TCGACGTCGA CCGGGATCAG TTCGCTGTCG ACGGGGCTGA GCTCGACCAA TAGCGCGGTG ACATCGCTAT CGACTTCGAC GTCGACCGGC ATCAGCTCGT TGTCGACCGG CCTGAGTTCG ACCGACAGCA TCGTGACGTC GCTGTCGACG TCGACATCGA CGGGGTTGTC ATCGGCCAAT AGTTCGATCG CGTCGTTGTC CACCTCGACC TCGACGGGCA TCGGTTCGTT GTCCACCGGG CTGAGTTCGA CCGACAGCAC GGTGACGTCG CTGTCGACGT CCACATCGAC GGGCCTGTCG TCGGCCAATA GTTCGATCAC GTCGCTGTCG ACCTCGACGT CGACGGGTAT CGGTTCGCTG TCCACCGGCC TGAGCTCGAC CAACAGTGCG GTGACGTCGC TGTCCACGTC CACGTCGACC GGCATCGGCT CGCTGTCCAC CGGCCTCAGT TCGACCAATA GCTCGGTGAC GTCGCTGTCC ACGTCGACGT CGACGGTCGT CGGCTCGTTG TCCACGGGCT TGAGTTCGAC CAACAGCTCG GTGACGTCGT TGTCCACGTC GACCTCGACG GTCGTCGGCT CGCTGTCCAC CGGCCTGAGC TCGACCAACA GCTCGGTGAC GTCGTTGTCC ACGTCGACCT CGACGGGCAT CAGCTCGCTG TCGACCGGCC TGAGTTCGAC CAACAGCTCG GTGACGTCGT TGTCCACGTC GACGTCGACG GGCATCAGCT CGCTGTCGAC CGGCCTGAGT TCGACCAACA GCTCGGTGAC GTCGCTGTCC ACGTCGACGT CGACGGTCGT CGGCTCGTTG TCCACCGGCC TGAGTTCGAC GAACAGCAAC CTGACCTCGC TGTCCACGTC GACTTCGACG GTCGTCGGTT CGCTGTCCAC TGGCTTGAGT TCGACCAACA GCTCGATCAC GTCGCTGTCC ACGTCGACGT CGACGATCGT CGGTTCGTTG TCCACCGGCC TGAGTTCGAC GAACAGCAGC CTGACGTCGC TGTCGACCGC CACGTCGACC GGGATCGGTT CGCTGTCGAC GGGCCTGAGC TCGATCGCGA ACAACAACAC GAACCTCGGC AACAGCACGG CCGGCGCGAT CGGCGGCGGC GCCACCTACG ATCCGACCAC CGGCACGATC TCGGCGCCGT CGTACGTGAC ATACAACAGC GACGGCTCGA CGACGATCAA CAACAACGTC GGCTCCGCGA TCGACAACAT CAACGCGAAC GGCATCAAGT ACTTCCACGC GAACTCGACC GCGCCGGACA GCCAGGCGCT CGGCCTGGAC AGCGTCGCGA TCGGCCCGAA CGCGATCTCG CGTGTGGACG GCAGCATCGC GCTCGGCTCC GGTTCGGTGG CCGATCGCGC CGTGGTGCCG TCGTCGGGCA TCCTCCGCAA CGGTACCGCG TCGATCCCGT TCAACACGAC GGATCAGACG CTGCTCGGCG CGGTCTCGGT AGGTGATGCG ACGAACAAGA CGTACCGCCA GATCACCAAC GTCGCGGACG GCACCGGCCA GCAGGATGCG GTGACGGTGC GCCAGCTGAC CGGCGCGCTG CAGTCGTTCG CGGTCACCGG CCAGAAGTAC TTCCACGCGA ATTCGACGGC GGCCGATTCG CTCGCGGTCG GCGCGGAATC GGTCGCCGTC GGGCCGACGA CGGTCGTCAA CGGCGACAAC GGCGTGGGCA TCGGCAACGG CGCGATCGTC GACCAGACCG CGCCGGGGGG GATCGCGATC GGTCAGGCGG CGAGTTCCGC GCAAGTCGAC GCGATCGCGC TGGGCAGCGG CGCGACGGCG ACCGGCGCGC AGTCGGTCGC GCAAGGCGCC AACGCGGTGG CGGTCAGCGT GGGCAGCGTC GCGCTCGGCT CGGGCGCGCG CAGCACGGCG ACCGATGCGC TCGCGCTCGG CGCCGGTGCG TCGGCGACGT TCGCGAACAG CGTCGCGCTG GGAGCAGGCT CGCTGACCAC GGTCGGTGCG CTGACGAACT ACGTCGCGTA CGGGTTGAGC AGCCCGCAGT CGTCGGCTGG AGAAATCAAC ATCGGCAATC GCCAGATCAC CGGCCTTGCG GCCGGCAAGA ACGGCACCGA CGCGGTGAAC GTGTCGCAGC TCGATTCGGT CGCGAACCAG TTGACGACGT TGATCGACCA GCGCACGGCC AACCTCGGCG GGCAGTACAC GACGAACCCG AACGGCTCGA ACGTGCCGCC GGGCGCGAGC GGGTCGAATT CGTCGGCGGG CGGTTCGGGG GCGGTCGCAT CGGGCGCGAA CAGCACGGCG GTCGGCAACA ATGCGCTCGC ATCGGGCAAC GGCTCTTCCG CGATCGGCGT GGGCGCGACG GCAGCGGGCA ACAACTCGAC CGCGATCGGC ACGGGCAGCA ACGACGGCGG GCGCTCGAAC GTGGTCGCGG TCGGCTCGGC GGATTCGGCG CGCCAGGTCG TGAACGTCGC GGCCGGCACG CAGGGTACCG ACGCCGTGAA CGTGAACCAG TTGAACGCGG TCTCGAACCA GTTCACGCAG TCGCTGAACA CGGTCAACAA CCAGCTCACG CAGATGCAGC AGCAGATCCA GCAGACCGAT TCGATGGCCC GCGAGGGGAT CGCCGCGACC GCCGCGATGG CGTCGATTCC GCACATGGAC CGCGATTCGA ACTTCGCGAT GGGGGTCGGC ACGGCGACGT TCCAGGGCCA GAAGGCCATG GCGGTCGGCG TGCAGGCGCG CGTCACGGAG AACCTGAAGG CGACGCTGAA CGGCGGTTTC GCCGGCAGCC AGCGCGTCGT CGGCGCGGGC ATGCTGTATC AGTGGAAGTG A
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Protein sequence | MNKSFKSIWN EALGAWVAAS ELDRARGKRV ASSRRAPECA AHGEAATHAG MPSAPSVLRL AVLTATACLG LFHASAHAQY AQDGGTASGG TTAISIGLGS TAAQQNSTAV GNLSTAQGLS ATALGPGAHA MGDGSTSVGI NSQATGVNSS ALGVQAIGSG DYSVAIGNLS SATQSGAVAM GSGAAATGVS AVGLGNNALA SGQYAAAVGL GASAAGAQSV SLGYASHATN TGSVALGNQS TSSGAAGVAV GSGALTTGNS GVAMGVNSGA KGTASIAIGW GGTAGVPGSG TQSLGTSSIA MGSNTNAGAD QALAFGLNAN ASGVSSIAMG VQSTATQQFA TALGNLSLAT GVSSSALGPG ATASATNATA VGINSVAAAA STVAIGDSNS VAAAAGAGSI AGGNNSKVLG GIGAVALGLG QTVSGNGAVA IGDPSTAIGT GAVTMGSNNT ANGDGAVAIG NTNNAQGTGS LALGNTSTAA AAGAVAFGAS AVANNANDVA LGSGSTTAAP NPTASAVIGG VTYNFNGINP ASVVSVGNVG AERQITNVAA GRISSSSTDA INGSQLAATN TAVDSLSTST ASSITSLSTG VSSLSTGLSS TNSAVTSLST STSTGISSLS TGLSSTNSAV TSLSTSTSTG ISSLSTGLSS TDSIVTSLST STSTGLSSAN SSIASLSTST STGIGSLSTG LSSTDSTVTS LSTSTSTGLS SANSSITSLS TSTSTGIGSL STGLSSTNSA VTSLSTSTST GIGSLSTGLS STNSSVTSLS TSTSTVVGSL STGLSSTNSS VTSLSTSTST VVGSLSTGLS STNSSVTSLS TSTSTGISSL STGLSSTNSS VTSLSTSTST GISSLSTGLS STNSSVTSLS TSTSTVVGSL STGLSSTNSN LTSLSTSTST VVGSLSTGLS STNSSITSLS TSTSTIVGSL STGLSSTNSS LTSLSTATST GIGSLSTGLS SIANNNTNLG NSTAGAIGGG ATYDPTTGTI SAPSYVTYNS DGSTTINNNV GSAIDNINAN GIKYFHANST APDSQALGLD SVAIGPNAIS RVDGSIALGS GSVADRAVVP SSGILRNGTA SIPFNTTDQT LLGAVSVGDA TNKTYRQITN VADGTGQQDA VTVRQLTGAL QSFAVTGQKY FHANSTAADS LAVGAESVAV GPTTVVNGDN GVGIGNGAIV DQTAPGGIAI GQAASSAQVD AIALGSGATA TGAQSVAQGA NAVAVSVGSV ALGSGARSTA TDALALGAGA SATFANSVAL GAGSLTTVGA LTNYVAYGLS SPQSSAGEIN IGNRQITGLA AGKNGTDAVN VSQLDSVANQ LTTLIDQRTA NLGGQYTTNP NGSNVPPGAS GSNSSAGGSG AVASGANSTA VGNNALASGN GSSAIGVGAT AAGNNSTAIG TGSNDGGRSN VVAVGSADSA RQVVNVAAGT QGTDAVNVNQ LNAVSNQFTQ SLNTVNNQLT QMQQQIQQTD SMAREGIAAT AAMASIPHMD RDSNFAMGVG TATFQGQKAM AVGVQARVTE NLKATLNGGF AGSQRVVGAG MLYQWK
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