| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | M446_5503 |
|---|
| Symbol | mdoD |
|---|
| ID | 6131357 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium sp. 4-46 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010511 |
|---|
| Strand | - |
|---|
| Start bp | 6035714 |
|---|
| End bp | 6037402 |
|---|
| Gene Length | 1689 bp |
|---|
| Protein Length | 562 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 641645637 |
|---|
| Product | glucan biosynthesis protein D |
|---|
| Protein accession | YP_001772253 |
|---|
| Protein GI | 170743598 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG3131] Periplasmic glucans biosynthesis protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.545727 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.294343 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGCGAC GACGCCCCGC CTCGCCCCGG CCGACCCACG CGCGAGAGAT CCAGGCCCCC
GCCCGCGACG CGGCGGCCGG CCTCGACCGC CGCGCCGTGC TGGCGCTCGC CGGTGCCTTC
GCGGCGGGCG GCGCCCTCGC GCCGACGGGC GCCCGCGCGG AGGATCCGCC CGCGCCGCCG
GCGCTCGGGG ACGGCGAGCG CTTCGACCCG GCCGCGGTGG TGGCCCTGGC CCGGGCGCTG
GCGGCCAAGC CCTACGCGGC CCCGCCCTCC GCCCTGCCGG ACGCCTTCGG CAAGCTCACC
TACGAGCAGT ACATCGCGAT CCGGCCGAAG CCCGAACTCC TGATCTGGCG CGGGGAGGGC
CGCGGCTTCG TGGTCGAGCC CCTGCACCGG GGCTACCTGT TCACGAACCC GGTCAGCCTG
CACACGGTCG AGGACGGGAT CGTCCGGCGC ATCCCCTACG ACCGCGACCT GTTCGAGTTC
CGCAAGACCG CCCCGCCCGA GGCCGGCCGC GACCTCGGCT TCTCGGGCTT CCGCCTCTAC
GGGAGCTTCG GGGGCGGGCC GCCCGCCGAT TGCGCGATCT TCCAGGGCGC CTCGTTCTTC
CGGGCCCTCG CCGCGGGCCA GAGCTACGGC ATCACCGCGC GCGCCCTCAC CCTGCGCCCG
GCCGAGGCGC GGGGCGAGGA ATTCCCGCTC TTCCGGGCCT TCTGGCTGGA GCGGCCGGGC
CCGGCCAGCA CCCAGATCGT GATGCACGCG CTGATCGATT CCGACTCCGC CGCCGCGGCC
CTGCGCATGA CGCTGCGCCC GGGCGACGCC ACCATCGTGG ACATCGAGGC GACCCTGTGC
CCGCGCACCA GCCTCGACCA TGTCGGGCTC GGCGGCATGA CGGGCGCCTA CCTGTTCGGC
CCGGCCGACC ACCGCAACAC CGACGACGCC CGCCCCGCCG CCCACGAGAT CGGCGGCCTG
CAGATCCGCA ACGGCGGGGG CGAGGCGCTC TGGCGGCCCG TGCAGAACCC CGAGACGCTG
CAGATCTCCT CCTTCCTCGA CCAGGACCCG AAGGGCTTCG GCCTCGTGCA GCGCCACCGC
GACTACGCGG ATTACCAGGA CGACGTGCAG CACTGGGAGC GCCGCCCGAG CCTGTGGATC
GAGCCCTTCG GCACCTGGCA GCCCGGCCAG GAGCAGCGCG GCTGGGGCCC GGGCGCGGTC
CAGCTCATCG AGATCCCGAG CGAGTCCGAG GTCAACGAGA ACATCCTGGC CTATTGGCGG
CCCAAGGAGC CGATCGCCAG GGAGACCGCT TTCACCTTCC GGCAATACTG GTGCTGGGAC
GTGCCGGGGG CGCCGCCCCT GGCGCGCTGC ACCGGCACGC GGATCGGCAA GGGCAGTTCG
GGCAAGCGCC GCCTCTTCCT CGTCGACTTC GCGGGCGACG CGCTCTTCGC CCCGGAGGTG
AGGCCCGAAT CCCTGAAGCT CGCGGTCACG GCCTCGCCGG GGACGATCGT GCAGCCCAAG
CCCGACGCGC CGCCGGTGAA GCGCGACCCG CAATTCCGCC CCCTCCTCTA CCTCTATCCC
GAGCGCAAGA CGGTGCGCGC CGTCTTCGAA CTGGACCCGG GCGGCGAGAC CGCCTGCGAG
ATGCGCCTCG TCGTCAAGAA CGGCGACCAA CCCGTCAGTG AGACATGGCT GTTTCGTTGG
ACCCCGTGA
|
|---|
| Protein sequence | MTRRRPASPR PTHAREIQAP ARDAAAGLDR RAVLALAGAF AAGGALAPTG ARAEDPPAPP
ALGDGERFDP AAVVALARAL AAKPYAAPPS ALPDAFGKLT YEQYIAIRPK PELLIWRGEG
RGFVVEPLHR GYLFTNPVSL HTVEDGIVRR IPYDRDLFEF RKTAPPEAGR DLGFSGFRLY
GSFGGGPPAD CAIFQGASFF RALAAGQSYG ITARALTLRP AEARGEEFPL FRAFWLERPG
PASTQIVMHA LIDSDSAAAA LRMTLRPGDA TIVDIEATLC PRTSLDHVGL GGMTGAYLFG
PADHRNTDDA RPAAHEIGGL QIRNGGGEAL WRPVQNPETL QISSFLDQDP KGFGLVQRHR
DYADYQDDVQ HWERRPSLWI EPFGTWQPGQ EQRGWGPGAV QLIEIPSESE VNENILAYWR
PKEPIARETA FTFRQYWCWD VPGAPPLARC TGTRIGKGSS GKRRLFLVDF AGDALFAPEV
RPESLKLAVT ASPGTIVQPK PDAPPVKRDP QFRPLLYLYP ERKTVRAVFE LDPGGETACE
MRLVVKNGDQ PVSETWLFRW TP
|
|---|
| |