| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | M446_5197 |
|---|
| Symbol | |
|---|
| ID | 6130935 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium sp. 4-46 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010511 |
|---|
| Strand | + |
|---|
| Start bp | 5721995 |
|---|
| End bp | 5723572 |
|---|
| Gene Length | 1578 bp |
|---|
| Protein Length | 525 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 641645332 |
|---|
| Product | phytoene desaturase |
|---|
| Protein accession | YP_001771956 |
|---|
| Protein GI | 170743301 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG1233] Phytoene dehydrogenase and related proteins |
|---|
| TIGRFAM ID | [TIGR02734] phytoene desaturase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.128771 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGCTTCAGC CGCGTGAAGG CTACCGCACC CTGTCGGGGC GGCGTGCGGT GGTGGTGGGG
GCGGGGCCGG GCGGACTCGC GGTGGCGCTG CTCCTCGCCC GGGAGGGCGT CCACGTCACC
GTCGTGGAGA AGGACGACTG CGTCGGCGGG CGCACCCGCA CCGTGACGGC GCCGGGCGGC
TACCGATTCG ACATCGGGCC GACCTTCTTC CTCTACCCGC GCATCCTCGC CGACATCTTC
GCCTCCTGCG GCGAGCGGCT GGAGGACCAC GTCCGGCTGG AGCGGCTCGA TCCGCTCTAC
CACCTCGTCT TCGAGGGCGG CGGCGAGATC CGCGCCACCT CGGACGTAAC CCGGCTCCAG
GCCGAGATCG CCCGCATGGC GCCGGCCGAC GCCGCCAACG TGCCGCGCTA CCTCGCGGAC
AACCGCGCCA AGCTCGAGGC CTTCCGGCCG GTGCTGGAAC AGCCCTTCGA CAGCCTGCGC
AGCCTGGTCT CGGCGCCGAT GCTGAGGGCG CTGCCGCTCC TGCGCCCGCA CGCCACCGTG
GACCGCGACC TGCAGCGCTA CTTCGCCGAC CCGCGGGTGC GCCTCGCCTT CTCGTTCCAG
ACCAAGTACC TCGGGATGTC GCCGTTCCGC TGCCCGAGCC TGTTCACCAT CCTGAGCTTC
CTCGAATACG AGCACGGGGT CTTCCATCCC GTGGGCGGCT GCGGCGCGGT CTCGGAGGCG
ATGGCGGGGC TCGCCCGGCG GCTCGGCGTC GACATCCGCC TGGGCACCGC CGTCGACCGG
GTGCTGTTCG AGGGAGACCG CGCGGTCGGG GTCGAGGCCG GGGGCGAGCG CCTGCCGGCC
GATTCGGTGG TGGTGAACGG CGATTTCGCC AAGGTGGTGC GCGCCCTGGT GCCCGAGCGG
CACCGGCCGC GCTGGCGCGA CGCCAAGCTC GACCGGGCGC GCCTCTCCTG CTCGACCTTC
ATGCTCTATC TGGGCCTGGA GGGGCGGATG CCGGAGGGCC TCGGCCACCA CACGATCCTG
CTCGCCGAGG AGTACCGGCG CAACATCGCG GAGATCTCGA CCGGTATCCT GCCGCGCCAG
CCCTCGCTCT ACGTGCAGCA TGCCGGCTTC ACGGATGGCG GCATGGCGCC GCCCGGCCAT
ACCAGCCTCT ACGTGCTGGT CCCGGTGCCG AACCTGCGCG CCGACATCGA CTGGGCGACG
GTGCGGCCCC AGTATCGCCG CCTCGTCCTC GACCGGCTGA AGCTGCTCGG CCTGACCGAC
ATCGAGCGGC GCATCCGCTA CGAGCGCATC GTCGATCCGA CCGACTGGCG CGACGCGTTC
GCGGTCAACG AGGGGGCGAC GTTCAACCTG TCGCACGATC TCGGGCAGAT GCTGTATTTC
CGGCCGCACA ACCGCTTCGG CCGCGGCCTG TACCTGGTCG GCGGCGGCAC CCATCCGGGC
TCGGGCCTGC CGGTGATCTA CGAGGGCGCG CGCATCACCG CCCGGCTCCT GCTGGAGGAC
CTCGCCCGGC AGGGCCGGCG CTCCCTGCCC GACCTCGCGC CGCCGCTCGA AGTCGCGCCG
AGCGGGAAGG CGACGTGA
|
|---|
| Protein sequence | MLQPREGYRT LSGRRAVVVG AGPGGLAVAL LLAREGVHVT VVEKDDCVGG RTRTVTAPGG
YRFDIGPTFF LYPRILADIF ASCGERLEDH VRLERLDPLY HLVFEGGGEI RATSDVTRLQ
AEIARMAPAD AANVPRYLAD NRAKLEAFRP VLEQPFDSLR SLVSAPMLRA LPLLRPHATV
DRDLQRYFAD PRVRLAFSFQ TKYLGMSPFR CPSLFTILSF LEYEHGVFHP VGGCGAVSEA
MAGLARRLGV DIRLGTAVDR VLFEGDRAVG VEAGGERLPA DSVVVNGDFA KVVRALVPER
HRPRWRDAKL DRARLSCSTF MLYLGLEGRM PEGLGHHTIL LAEEYRRNIA EISTGILPRQ
PSLYVQHAGF TDGGMAPPGH TSLYVLVPVP NLRADIDWAT VRPQYRRLVL DRLKLLGLTD
IERRIRYERI VDPTDWRDAF AVNEGATFNL SHDLGQMLYF RPHNRFGRGL YLVGGGTHPG
SGLPVIYEGA RITARLLLED LARQGRRSLP DLAPPLEVAP SGKAT
|
|---|
| |