| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | M446_4235 |
|---|
| Symbol | |
|---|
| ID | 6129979 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium sp. 4-46 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010511 |
|---|
| Strand | + |
|---|
| Start bp | 4673151 |
|---|
| End bp | 4674341 |
|---|
| Gene Length | 1191 bp |
|---|
| Protein Length | 396 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 641644379 |
|---|
| Product | succinyl-diaminopimelate desuccinylase |
|---|
| Protein accession | YP_001771018 |
|---|
| Protein GI | 170742363 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
|---|
| TIGRFAM ID | [TIGR01246] succinyl-diaminopimelate desuccinylase, proteobacterial clade |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.00395056 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | GTGCCGACGA CACCCTCACC GCTCGCCCTC GCCCAGGGCC TGATCCGCTG CCCCTCCGTC
ACGCCCGAGG AGGGCGGCGC CCTCGCCTAC CTCGCCGGGC TGCTGGCGGC GGCGGGCTTC
TCGGTCGAGC GCCCGGTCTT CTCCGCGCCC GGCACGCCCG ACGTCGAGAA CCTCTACGCC
CGCATCGGCG CGGACGGGCC CTGCCTGCTG CTGGCCGGGC ATACCGACGT CGTGCCGCCC
GGGGAGCCCG CCCTGTGGCG CCACGATCCC TTCGCGGGCG TCGTCGAGGG CGGCGAGCTC
CACGGCCGCG GCGCCGTCGA CATGAAGGGC GGCATCGCCT GCCTCGCCGC CGCGTCCCTG
GCCTTCCTGG CCGAGCGCGG GCCGGCCTTC GGCGGCTCGA TCGCCTTCCT GGTCACCGGC
GACGAGGAGG GGCCGGCGGT GAACGGGACC GTGAAGCTCC TCGCCTGGGC GCGGGCGCGG
GGCGAGCGCT TCGACCATTG CATCCTGGCC GAGCCGACCA ACCCCGACGC GCTCGGCGAC
ATGATCAAGA TCGGCCGGCG CGGCTCCCTC ACCGCCACGC TCACCGTGCT GGGCGCGCAG
GGCCACGTCG CCTATCCGCA CCGGGCCGAG AACCCGATCC CGGGCCTGAT CCGCCTCGCG
GGCGCGCTCC TCGCCGCCCC CCTCGACGAG GGCACGGCGC ATTTCGACGC CTCCAACCTC
GAATTCACCA CGATCGACGT CGGCAACCCG GCCTCGAACG TCATCCCGGC GCAGGCCCGC
GCCGTGCTCA ACATCCGCTT CAACGACCTC TGGAATCCGG CCAGCCTCGA GGCCGAGCTG
CGGCGGCGCC TCGACGCGGC GGCCGGGAAC GCGGTGCGCT ACCGCCTCGA CGTGCAGCCG
ACCAACGCGG TCGCCTTCCT GACCCAGCCC GACGCCTTCG TGGACCTCGT CACCGCCGCG
ATCGAGGCCG AGACCGGGCG CCGCCCGGCC CTCTCCACCA CGGGGGGAAC CTCGGACGCG
CGCTTCATCA AGGAGGCCTG CCCGGTGATC GAGTTCGGCC TCGTCGGCCA GACCATGCAC
CAGGTCGACG AGCGCGTCGC GGTGGCGGAT CTCGATCGCC TCGCCGCCAT CTTCCGCCGC
ATCCTGGATG CCTATTTTCC GGCCAGCCCG CCGCCCGCCG AACGGGCTTG A
|
|---|
| Protein sequence | MPTTPSPLAL AQGLIRCPSV TPEEGGALAY LAGLLAAAGF SVERPVFSAP GTPDVENLYA
RIGADGPCLL LAGHTDVVPP GEPALWRHDP FAGVVEGGEL HGRGAVDMKG GIACLAAASL
AFLAERGPAF GGSIAFLVTG DEEGPAVNGT VKLLAWARAR GERFDHCILA EPTNPDALGD
MIKIGRRGSL TATLTVLGAQ GHVAYPHRAE NPIPGLIRLA GALLAAPLDE GTAHFDASNL
EFTTIDVGNP ASNVIPAQAR AVLNIRFNDL WNPASLEAEL RRRLDAAAGN AVRYRLDVQP
TNAVAFLTQP DAFVDLVTAA IEAETGRRPA LSTTGGTSDA RFIKEACPVI EFGLVGQTMH
QVDERVAVAD LDRLAAIFRR ILDAYFPASP PPAERA
|
|---|
| |