| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | M446_2265 |
|---|
| Symbol | |
|---|
| ID | 6129019 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium sp. 4-46 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010511 |
|---|
| Strand | - |
|---|
| Start bp | 2523592 |
|---|
| End bp | 2524920 |
|---|
| Gene Length | 1329 bp |
|---|
| Protein Length | 442 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 75% |
|---|
| IMG OID | 641642491 |
|---|
| Product | TRAP transporter solute receptor TAXI family protein |
|---|
| Protein accession | YP_001769159 |
|---|
| Protein GI | 170740504 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2358] TRAP-type uncharacterized transport system, periplasmic component |
|---|
| TIGRFAM ID | [TIGR02122] TRAP transporter solute receptor, TAXI family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.00194673 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGATGCGCC GTCACATCCC GATCGCCGTG GCGACGCTGC TCGCCCTGCT GGCAGCCGGG
CTGCTCGCCT ACCAGTGGGC GTGGCAGCCG ACGACGCTGC GCGTCGCGGT CGGGCCGCCG
GGAGGCGAGG ACGCGCGGAT GATGGGCGCC GTCGCCCAAT CCCTCGCCCG CGGCCACGAG
GACGTGCGCC TGCGGGTCGT GCCGGCGGGC GGCGTCGCCG AGAGCGCGGC CCTGGCCGAG
CGCGAGAAGG CCGACCTCGC GGTGGTGCGC TCGGATGTCG GCATTCCGGC CACGACGCAG
ACCGTGGCCA TCCTGCACCG CGACGCGGCC GTGCTGGTGA CCGTCGAGGG CGGTCCCTCC
GAGGTGGCCG ACCTCAAGGG CCGGCGCGTC GGCGTGGTGC GTCCGCAGGC CGGCAACGCG
CAGCTCCTCG CCACCATCCT GGAGCATTAC GAGGTGCCGC CGGGCAGCAT CGCCACCGTT
CCCCTCGCGC ATGGCGAGGA GGTCGGGCAC GCCCTCCAGG AGGGTCGGAT CGACGCGGCG
CTCGTGGTCG CCCCCCTCAC GGGGCCGACG ATGACCGACG CCGTGGCCGG CGTCGCGCGG
GCGGGCCTGC ACCTGAGCTT CATCCCGGTC GGCGAGGCGG CGGCGATCGC CCGGCGCAGG
CCGGCCTTCG AATCGGTCGA GGTCGGCCGC GGCACCTTCG GCGGCACGCC CTCGCGCCCG
GCCGAGGCCT TCACGACGCT CGGGGTGAGC CACCGCCTCG TCGCGCAGGC CAAGCTCCCG
GACGCCACCG TCTCGGAACT CACCCGCCTC CTCTTCGTCA CCCGGCCGGC CATCGTCGGC
GAGGTGCCCC TCGCCAACCA GATCGAGGCG CCCGACACCG CCAAGGGCGG CTCGCTGCCC
CTGCATCCCG GCGCCGAGGC CTATTACGAC GGCGAGATCG AGACCTTCTT CGAGCGCTAC
GGCGACTGGT TCTACCTGCT CGTCATGGTG CTCTCGATCC TGGGCTCGGT CGGCGCCACC
CTGGTGTCGC GGGCGGCGAA CCGCTCCCGC GCCCGCGACA TGGAGCTGCT GCGCGAACTC
CTCGCCATCG TGCGGGCGAC CCGGGACATG GAGAACGAGG ACGACCTCTT CGCCCTGGAG
CACAAGGCCG ACGAGATCCT GGCGGCCGCG CTCGCGCGGG CCGGAACCGG CGCGATCGAC
AATGCCGGGG TGGCGGCCTT CACGCTCGGG CTCGATCAGG CCCGCCGCGC CATCGCCGAG
CGGCGGGTGC TGATCCAGAG CGGGCACGTG CATCCGGCCG AGCCGCCGGG GCGGGTCGCG
GCCGAGTAG
|
|---|
| Protein sequence | MMRRHIPIAV ATLLALLAAG LLAYQWAWQP TTLRVAVGPP GGEDARMMGA VAQSLARGHE
DVRLRVVPAG GVAESAALAE REKADLAVVR SDVGIPATTQ TVAILHRDAA VLVTVEGGPS
EVADLKGRRV GVVRPQAGNA QLLATILEHY EVPPGSIATV PLAHGEEVGH ALQEGRIDAA
LVVAPLTGPT MTDAVAGVAR AGLHLSFIPV GEAAAIARRR PAFESVEVGR GTFGGTPSRP
AEAFTTLGVS HRLVAQAKLP DATVSELTRL LFVTRPAIVG EVPLANQIEA PDTAKGGSLP
LHPGAEAYYD GEIETFFERY GDWFYLLVMV LSILGSVGAT LVSRAANRSR ARDMELLREL
LAIVRATRDM ENEDDLFALE HKADEILAAA LARAGTGAID NAGVAAFTLG LDQARRAIAE
RRVLIQSGHV HPAEPPGRVA AE
|
|---|
| |