| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | M446_0560 |
|---|
| Symbol | |
|---|
| ID | 6130565 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium sp. 4-46 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010511 |
|---|
| Strand | - |
|---|
| Start bp | 668102 |
|---|
| End bp | 669979 |
|---|
| Gene Length | 1878 bp |
|---|
| Protein Length | 625 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 641640881 |
|---|
| Product | TRAP C4-dicarboxylate transport system permease DctM subunit |
|---|
| Protein accession | YP_001767556 |
|---|
| Protein GI | 170738901 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component
[COG3090] TRAP-type C4-dicarboxylate transport system, small permease component |
|---|
| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.582105 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGCGG CGGCCGACAT GCCGGGCCGC GCCGACGCGC TCCCCGTCCC CCATTCCGAC
TGGCTCTCCC TCGCCGACCG CGTCCTGCGC GCGGCCGTCG AGGGACCGGC CGCCCTCCTG
GTGGCCGCCG AGGTGGCGAT CCTGTTCGCC GGCATCGTCG CGCGGGCGCT CGGGCACCCG
ATCATCTGGA GCGACGAACT CGCCTCGATC CTGTTCCTCT GGCTCGCCAT GCTGGGCAGC
GTCGTGGCGA TCCAGCGCGG CGAGCACATG CGGCTCACCT TCGTGGTCGG CAAGCTCCCG
CCGCGGGCGC AGGCCTGGTG CGAGGCGCTG GCGGTCGGGA CGGTCTTCGT CTTCCTGGTC
CTCCTGCTCC GCGCCGCCTC CGACTACACG GAGGACCAGT CCTTCGTGGA GACGCCGGCC
CTCGGCTGGC CCGGGACGGT GCGGGCGCTC GCGGTGCCGG TCGGCTTCGT GGCCGCGCTG
CTCGGCTGCT CGCTGCGCCT CGCCCGCCAC GGGATCGCCG ACCTCCTCGG GGTCGGGCTC
GTCCTCGCGG GGCTGGCCGG GCTCCTCGCC CTCGGCGCCC CGCTCCTGAC GGATCTCGGC
AACTGGGCCC TCGTGGTGTT CTTCATCGGG CTCCTCGGCC TCGGCATCCT GGCGGGCGTG
CCGATCGCGT TCTCGTTCGC GCTCGCGACC TCGGCCTACC TGCTGACCGT CACCTCGACG
CCGCTCACCA TCGTGGTCGG GCGGATGGAC GAGGGCATGA GCGGCCTGAT CCTGCTCGCC
ATCCCGCTCT TCGTGCTGCT CGGGCAGCTC GTCGAGGCGA CCGGGATGGC GCGGGTGATG
GTGGCCTTCC TGGCCTCGCT GCTCGGCCAC GTGCGGGCGG GCATGTCCTA CGTGCTCCTC
GGCGCGATGC TGCTCGTCTC CGGCATCTCC GGCTCGAAGA CGGCCGACAT GGCGGCGGTC
GCCCCGGTGC TGTTTCCCGA GATGCGCCGG CGCGGCATGA AGGACGGCGA GCTGCTCTCG
CTGCTCGCGG CCTCCGGCGC GATGAGCGAG ACGATCCCGC CCTCGATCGT GCTCATCGCC
ATCGCCTCGG TCACCGGCGT GTCGATCGCC GCCCTGTTCA CGGCCGGCAT CCTGCCCGCC
CTGGTCCTCG CCCTCGTGCT GGCGGCCGTC GCCCGCTACC GGGCGGGCCG GGAGGAGGAC
GCGGTCCGGG TGGCGCGCGC GCCCGCCTCG GTGGTGGGCC GCACCCTGCT GGCGGCGCTG
CCGGCCCTCC TGCTGCCGTT CCTGATCCGC ACCGCCGTGG TGGAGGGGAT CGCGACGGCC
ACCGAGGTCT CGACCATCGG CATCGCCTAC TCGCTGGTGC TCGGCCTCCT CGTCTACCGG
GGCGGCCTGC GCTGGCGGGC GGTGCTGCCG ATGCTGGCCC GCACGGCCTC GCTCTCGGGC
GCGATCCTGT TCATCGTCGG GGCGGCGAGC GCGATGGCCT GGGCGCTCAC GCAATCGGGC
TTCTCGCACG ACCTCGCCCG GGCGATGGCC GCGGTCCCCG GCGGGCAGGT CGGCTTCCTG
CTGATCTCGG TCGTGGCCTT CATGGTGCTC GGAAGCCTGC TGGAGGGCAT CCCGGCCATC
GTGCTGTTCG GGCCGCTCCT CTTCCCGATC GCGCACCAGT TCGGGATCCA CGAGGTGCAC
TACGCCATGG TGGTCATCCT CGCCATGGGC CTGGGGCTGT TCGCGCCGCC CTTCGGCCTC
TGCTACTACG CGGCCTGCAT CATCGGGCAG GTCTCGCCGG AATCCGGGAT GCGCCGGATC
TGGATCTATC TCGGGGCCCT GTTCCTCGGC CTGCTCGTGC TCACCTTCGT GCCCTGGTTC
TCGACCGGGT TCCTCTGA
|
|---|
| Protein sequence | MSAAADMPGR ADALPVPHSD WLSLADRVLR AAVEGPAALL VAAEVAILFA GIVARALGHP
IIWSDELASI LFLWLAMLGS VVAIQRGEHM RLTFVVGKLP PRAQAWCEAL AVGTVFVFLV
LLLRAASDYT EDQSFVETPA LGWPGTVRAL AVPVGFVAAL LGCSLRLARH GIADLLGVGL
VLAGLAGLLA LGAPLLTDLG NWALVVFFIG LLGLGILAGV PIAFSFALAT SAYLLTVTST
PLTIVVGRMD EGMSGLILLA IPLFVLLGQL VEATGMARVM VAFLASLLGH VRAGMSYVLL
GAMLLVSGIS GSKTADMAAV APVLFPEMRR RGMKDGELLS LLAASGAMSE TIPPSIVLIA
IASVTGVSIA ALFTAGILPA LVLALVLAAV ARYRAGREED AVRVARAPAS VVGRTLLAAL
PALLLPFLIR TAVVEGIATA TEVSTIGIAY SLVLGLLVYR GGLRWRAVLP MLARTASLSG
AILFIVGAAS AMAWALTQSG FSHDLARAMA AVPGGQVGFL LISVVAFMVL GSLLEGIPAI
VLFGPLLFPI AHQFGIHEVH YAMVVILAMG LGLFAPPFGL CYYAACIIGQ VSPESGMRRI
WIYLGALFLG LLVLTFVPWF STGFL
|
|---|
| |