| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcenmc03_3102 |
|---|
| Symbol | dapF |
|---|
| ID | 6124763 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia cenocepacia MC0-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010508 |
|---|
| Strand | + |
|---|
| Start bp | 3442659 |
|---|
| End bp | 3443588 |
|---|
| Gene Length | 930 bp |
|---|
| Protein Length | 309 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641639694 |
|---|
| Product | diaminopimelate epimerase |
|---|
| Protein accession | YP_001766382 |
|---|
| Protein GI | 170734435 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0253] Diaminopimelate epimerase |
|---|
| TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.671935 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCGCCG GCCGCCCGTG TCGTGCCGAC CGCCTTGTTC GCCATGGAAT TCCGGACCCA
GTGAAACTCT CGTTCACCAA GATGCACGGC GCGGGCAACG ACTTCGTCGT GCTCGACGGC
TACTCGCGCG CGCTGCCGCC GCTCACCGAA GCGCAGGTGC GCGCACTCGC CAACCGCCAC
TTCGGCATCG GCGCCGACCA GTTGCTGCTG GTCGAGAAAC CGACCGTCGA CGGCGCGGAT
TTCAAGTACC GGATCTTCAA TTGCGATGGC GGCGAGGTCG AACACTGCGG CAACGGCGCA
CGCTGTTTCG TGAAGTTCGT CAGCGACCGC GGCCTGACCG ACCGGCGCAG CGTGCGCGTG
CAGGTCATGA AGGGCCTGAT CACGCTGACG CTGCAGGACA ACGGCGAAGT CGTCGTCGAC
ATGGGCGCGC CCGTGTTCGC GCCGGCGCAG GTGCCGTTCG AGCCGTCGGG CCTCGACGGC
CGCCAGGAAG GCAACGACAC GCTGTGGCCG CTCGACGTGG GCGGCGCGAC GCGCTGGATT
TCGACGGTGT CGATGGGCAA TCCGCACGCG GTGCAGGTCG TCGACGACGT CGAAGCGTAT
CCGGTGCTGG AAGAAGGCCC GCTGATCGAG CGCCATGCGC GCTTCCCGCA GCGCGTGAAC
GCCGGCTTCA TGCAGATCGT GTCGCGCCGT GAAGTGAAGC TGCGCGTGTA CGAACGCGGC
GCGGGCGAGA CGCTCGCGTG CGGCACCGGC GCGTGCGCGG CGGTCGCGGC CGGCATCCGG
CGCGGCCTGC TCGATTCGCC CGTGACCGTG CACACGCACG GCGGCACGCT GACGATCAGC
TGGGACGGCG CGCGCGACGA AGCCGCCGCG CTGATGATGG CCGGCCCCGC CACGACCGTG
TTCGAAGGCG AGATCGACCT GAACGCCTGA
|
|---|
| Protein sequence | MAAGRPCRAD RLVRHGIPDP VKLSFTKMHG AGNDFVVLDG YSRALPPLTE AQVRALANRH
FGIGADQLLL VEKPTVDGAD FKYRIFNCDG GEVEHCGNGA RCFVKFVSDR GLTDRRSVRV
QVMKGLITLT LQDNGEVVVD MGAPVFAPAQ VPFEPSGLDG RQEGNDTLWP LDVGGATRWI
STVSMGNPHA VQVVDDVEAY PVLEEGPLIE RHARFPQRVN AGFMQIVSRR EVKLRVYERG
AGETLACGTG ACAAVAAGIR RGLLDSPVTV HTHGGTLTIS WDGARDEAAA LMMAGPATTV
FEGEIDLNA
|
|---|
| |