| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcenmc03_1967 |
|---|
| Symbol | ispD |
|---|
| ID | 6123631 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia cenocepacia MC0-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010508 |
|---|
| Strand | - |
|---|
| Start bp | 2187619 |
|---|
| End bp | 2188266 |
|---|
| Gene Length | 648 bp |
|---|
| Protein Length | 215 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 641638539 |
|---|
| Product | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase |
|---|
| Protein accession | YP_001765250 |
|---|
| Protein GI | 170733303 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1211] 4-diphosphocytidyl-2-methyl-D-erithritol synthase |
|---|
| TIGRFAM ID | [TIGR00453] 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.0708986 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCCGAAGC AATACCGCAC GCTGGCCGGC CGCGCGCTGC TGCACTACAC GCTCGCCGCG
TTCGACGCGT GCAGCGAGTT CGCGCAGACG CTCGTCGTGC TCGCGCCCGA CGACTCCCAT
TTCGATGCAC GCCGCTTCGC GGGCCTGCGC TTCGCAGTGC GCCGCTGCGG CGGCGGCTCG
CGGCAGGCGT CGGTGCTCAA CGGGCTGCTG GAGCTGGCCG AATTCGGCGC GACCGACCAT
GACTGGGTGC TCGTGCACGA CGCCGCGCGC CCCGGCATCA CGCCCGAGCT GATCCGTACG
CTCGTCGCGG CCCTGAAGGA CGACCCGGTC GGCGGGATCG TCGCACTGCC GGTGGCCGAT
ACGCTCAAGC GGGTGCCGGC CGGCGGCGAC GCGATCGCGC GCACCGAGTC GCGCGACGCA
CTGTGGCAGG CGCAGACCCC GCAGATGTTC CGTATCGGCA TGCTGCGCGA AGCGATCCTG
CAGGCGCAGC GCGAAGGGCA CGACCTGACC GACGAAGCGA GCGCGATCGA ATGGGCCGGC
CACACGCCGC GCGTCGTGCA GGGCAGCCTG CGCAACTTCA AGGTCACGTA CCCGGAAGAT
TTCGCGCTCG CGGAGGCGAT CCTCGCGCGC CCCGCGAACG CTTCCTGA
|
|---|
| Protein sequence | MPKQYRTLAG RALLHYTLAA FDACSEFAQT LVVLAPDDSH FDARRFAGLR FAVRRCGGGS
RQASVLNGLL ELAEFGATDH DWVLVHDAAR PGITPELIRT LVAALKDDPV GGIVALPVAD
TLKRVPAGGD AIARTESRDA LWQAQTPQMF RIGMLREAIL QAQREGHDLT DEASAIEWAG
HTPRVVQGSL RNFKVTYPED FALAEAILAR PANAS
|
|---|
| |