Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bcenmc03_1497 |
Symbol | |
ID | 6123175 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia cenocepacia MC0-3 |
Kingdom | Bacteria |
Replicon accession | NC_010508 |
Strand | + |
Start bp | 1660452 |
End bp | 1661783 |
Gene Length | 1332 bp |
Protein Length | 443 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 641638075 |
Product | type II and III secretion system protein |
Protein accession | YP_001764794 |
Protein GI | 170732847 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4964] Flp pilus assembly protein, secretin CpaC |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.0318341 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 5 |
Fosmid unclonability p-value | 0.0000037114 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAAAAAGA AACTGATTGG TTTGGCTATT GCATTGAGCG CGCTGGCGAT GCCGCCGCTG TCGGACGCGG CCGACACGAG CGGCACGATC AGCCTTGCGA TCGGCGCGCA GCGGCAGATT GCGACGGGGC GCGCGCTGCA GCGGGTCGCG GTCGGCGACC CGTCGGTGGC CGACGTGCTC GTCGTGAAGG GCGGGCGTGG CGGCGTGCTG CTGGTGGCGA AGAACGCCGG CGCGACGAAC GTGATGATCT GGGAGCGCGG CCGCGACGAG CCGACCGTCT ATAACGTGAA CGTCACGAGC GGTGCGGCGC GTGCACTCCT CGACGGAACG TCGCCGAGCG TGAACACGTA TGGCGGCACG ACGGTGATCG GCGGTGCGGC CGGAACGCTC GACGGGCATC AGCGGGCGGT CCATGCGGCG AAGACGGTCG GCGGCAAGGA CGGGACGACG CTCGATGCGT CGACGATTTC CGGCAAGAAC GTCGTGCAGG TCGATGTGCG GGTCGTCGAA TTCAGCCGTT CGGTGCTGAA GCAGGCGGGC CTGAACTTCT TCAAGCAGAG CAACGGCTTT GCGTTCGGCG CCTTCGCGCC GACGGGGCTC ACCTCGATTA CCGGTACGCC GGGCGGCTCG CTTACCTACA ACACGAGCGT ACCGATTTCG TCGGCGTTCA ACCTCGTCGT CAATTCGGTG TCGCGCGGAT TGTTCGCCGA CCTGTCGATT CTCGAGGCGA ACAACCTGGC GCGCGTGCTC GCACAGCCGA CGCTCGTCGC GTTGTCCGGC CAGAGCGCGA ACTTCCTCGC CGGCGGCGAG ATCCCGGTGC CGGTGCCGCA ATCGCTCGGC ACGATCTCGA TCGAATGGAA ACCCTACGGC GTCGGGCTCA CGGTCACGCC GACCGTGCTG AGTCCGCGGC GGATCGCGCT GAAGGTTGCG CCCGAGTCGA GTCAACTCGA CTTCGTGCAT TCGATCACGA TCAACAGCGT GCAGGTGCCC GCGCTGACGA CGCGGCGCGC GGACACGACG GTCGAGCTCG GCGACGGCGA AAGCTTCGTG ATCGGCGGCC TGATCGACCG CGAAACCACG TCCAACGTCA ACAAGGTGCC GTTCCTGGGC GATCTGCCCA TCATCGGCGC GTTTTTCAAG AATCTGAGCT ACCAGCAGAA CGACAAGGAG CTCGTGATCA TCGTGACGCC GCATCTCGTT GCGCCGATCG CGCAGGGCGC GCCGCTGCCG GCGACGCCGG GCGAGCTGTC CGAGCAGCGC GACGGTCCGG TGTGGCGTTC GTACCTGGGC GGCATGGCAT CGCCGGACGC AGGGCCGGGG TTCTCGAAAT GA
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Protein sequence | MKKKLIGLAI ALSALAMPPL SDAADTSGTI SLAIGAQRQI ATGRALQRVA VGDPSVADVL VVKGGRGGVL LVAKNAGATN VMIWERGRDE PTVYNVNVTS GAARALLDGT SPSVNTYGGT TVIGGAAGTL DGHQRAVHAA KTVGGKDGTT LDASTISGKN VVQVDVRVVE FSRSVLKQAG LNFFKQSNGF AFGAFAPTGL TSITGTPGGS LTYNTSVPIS SAFNLVVNSV SRGLFADLSI LEANNLARVL AQPTLVALSG QSANFLAGGE IPVPVPQSLG TISIEWKPYG VGLTVTPTVL SPRRIALKVA PESSQLDFVH SITINSVQVP ALTTRRADTT VELGDGESFV IGGLIDRETT SNVNKVPFLG DLPIIGAFFK NLSYQQNDKE LVIIVTPHLV APIAQGAPLP ATPGELSEQR DGPVWRSYLG GMASPDAGPG FSK
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