| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcenmc03_0435 |
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| Symbol | |
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| ID | 6122116 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia cenocepacia MC0-3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010508 |
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| Strand | + |
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| Start bp | 469675 |
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| End bp | 474258 |
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| Gene Length | 4584 bp |
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| Protein Length | 1527 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 641636992 |
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| Product | YD repeat-containing protein |
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| Protein accession | YP_001763735 |
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| Protein GI | 170731788 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3209] Rhs family protein |
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| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.00763231 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGCACAAC AACTTCCACC CGGTGCAGAG AAGGAACAGG CTGTTTCCTG GCTCAGCGAT
ATTTCACCGA AAGACGTGGC GGCGGGGGGC GACCGTTTCA ATAAGTGGTT GCTCAAGATC
AGCGGCAATC ACATTTCGTT CGAGGATCTC AAAACCGTCG CGAGTGCGGT GCCGATCATC
GGCAACCTGA TGGCGTTCTA CGATGCCGTG TGCGACATCG TGACGATCGT CGAGAAGCGT
CATGCCGATC TGCTCGATTA CCTTGGACTC GCGATCAACC TGATCGGGGT CATTCCGGTT
CCGCCGCCGC TGGCGTCGTT CCGACTGTCG GCGCGGCCGC TGTTGGCGCT TGTGCGCAAT
CAGTTGCTGG TGTCTCGCGG CAATCTCGGG GCGGCGATCA TTGGCGTGCT CGTTGCACAC
GTCAACGCCG CGGCCGCGAC GGAAATCGAG AACTTCCTGA AGACGTTGCA GGAAGTTCTT
GTCGATCTGC TGAATGACTG CGCGGCCAAG GCGCAGGAAT TGATGGTCGG TATTGCCAGC
GGACTCGAGC TTGCCCTCAA AGGGCAGATT TTCGACAGTA GTGCGAACGT GCGACGTACG
CAGCAGATCG CGCGGAAGAT GGGCGAGCGA TCCTGGTACA ACCCGAAGCT CTTGGTCGAT
GCGTTCGAGT ACGGTTGCGA AGGTTCGATC GCGTTGGGCA AGGAAGCCGG AAACGCGACG
GTCGGGACCG CCGCGAAGCT GGCGCCGGAT TCGTGGCTCC AACCGTTTCG CGATATCGTC
GCCTTCCTGA AGACTGAAGC GCCGAAAGTC GCGAAGGCCA TCCGTGATCT GAATGGCAGC
GAAGAAGGCA AGATGCTCTG GCTGATCGCG CAAGTGATCG AGGCCGTGGC AAGGGTGCGG
GCGAGCGGCA AGCTTCGTGA AAAGACCGCC GACGTGCCGA CTGGCGGCAA GGGAAGGGCA
CATCATGATC GCCCGCAGGA GCCGGTGGGC GCGGTCGAGC AGCATGCGCA TCCGGAGGGG
CCTGGCCAGA GCCCCTGCAA AGGTTGCGGG GTCGGCGCGT CGACCGGATC GATCGATTTC
GCTTTCGGCG ATGAGACGTT CACGCATACG GATTTTGAGC TGCCCGGCGC ATTGCCGCTT
GTCTGGGCGC GTACTTATCG GTCACGCCTG TCCGCATACG ACACCGGAGA ACTCGGCGCG
CGATGGATTA CGCCGTACAC GACGCGCATC GATATAGAAG GCGACACATG GTTCTACCGT
GATGCCAGCG GGCGCAGCAT TGAGTATCGC GCGCTCGCAG CCGGAAGCGT GCATGACGAT
CTCTCGGAAA ACCTGACGCT GTCGCGACTC GACGATACGT GGGTGACGAT TGCGTACGGC
CATGACGAGT TGCACGTGTA TGAACGGCGT GGCAACGCGT TCAGGCTGGC GATGCAGAAA
GATCGCGCGG GTAACACGAT CACGCTCGAC TACGATGCGC GCGACCACGT GGCGCGCCTG
ATTGATGCGA GCGGTAACGT GCTGTCGTTC GAGCACGACA AGCACGGCCG GATCGTACTG
ATCGAACAGG TGCTCGAAGA CGGTAAGCGC CGCACGCTCG CGAGCTACGC CTATGACGAA
GCGGCCGATC TGATCCGCGC AACCGATCGG CACGGCAACG CGTGGAACTA CCAGTACGAC
CGACATCTCG TGACGCGCTA CACCGATCGT ACCGGCCGTG GGATGTCGCT TGAATGGGAC
GGCGCGGACG CTGTCGACAA CGCGAATGCG AAATGCGTGC GCGAGTACGC GGACGACGGC
AGCCTCGATA TCCGTCTTGC GTGGCATCCG AACATTCGAT TGACCTACGT GACCGATGCG
CTCGGTCAGA CGACGCGTTA TTACTTCAAC ATCAAGGGCT ACGTTTATCG GATCGCCTAT
CCGGATGGGA ATGAGGAGTG GTTCCGCCGC GACGAGCACA ACAATCTGAC GTTGCACATT
CTGCCGGACG GCAGCGTCGA GCAGATGCGC TACGACGCGC GCGGTAACCG GACATGGCAC
GAGCGCGCTG ACGGCAGCAT TGTCGAGATG GCATACGACG ACAAGGACCA GATGATCCGG
CTCGTCGATC CGAACGGGCA CGTGTGGCAG CGCAAGTACG ACGATGCGGG CAATCTCGTC
GAGGAAATCG ATCCGTTCGA GCACTCGACG AAGTACAGCT ATAACGACAA GGGGCTGCCG
ACACAGATCA CCGATGCCAA AGGCGGATCG AAGGCACTCG AATACAACGC CGCCGGGCAA
TTGACCGGCT ACACGGACTG CTCCGGAAAG AAGACGGCGT GGCGCTACGA CGATATCGGG
CGTGCGATCG AGACAAAGGA TGCTTCCGGG GGCGTCGTTG CTTATGCATA TGGCCCGAAC
GGCCAGTTGA CGGAGATTCG TTCGCCGGCC GGTGTCGAAC ACGTGCAGTA CGATGCTGAA
GGTCGGTTGC TTGGGCATAC GGATCAACTC AATCGGTCGA CGCGATATGG CTACGATGCC
GTTGGCCGTA TCGCGAGCCG CGCGGACGCG CTCGGGCAGA CGATCGCGTA TCGCTACGAC
CGTCTCGGGC GCTTGACTGC CCTGACCGAT GCCAACTTTG CGACGTACCA GTTCCGCTAC
GATCCGGCAG GGCGGCTGAT CGAGGAAATC GCCTTCGACG GCAAGTCGAC GCGTTATCAG
TACGATCCGG ACAGCGGCAG TCTCGTTTCG ATCGATGAAG CGGGTTGCGT GACGTCGGTC
GACGTCGATG CGAACGGCCG TCTGCTGAAG CGCATCGCGG GTGACAGCGA GGAACGGTTC
GCCTACGATC CGAGCGGCAG GTTGATCGAC GCGGTGAATC GCTACAGCCG CGTGCAGTTC
TTCTTTGATC CGGTTGGCAA TCTGGTGCGT GAACATCACG CTTACGATCT GTTCGGCGAC
CGGCGCAGCT ACGTGTGGCA TCACGAATAC GACGAACTCG GCAATCGGCG GCGTACCGTT
CGGCCGGACG GGCATGCGGT CGACTGGCTG ATGTATGGCT CGGGGCATGT GCACGGGATG
CTGCTCGACG GCGAGGAGCG TGTGCAGTTC GAGCGCGATG ACTTGCATCG CGAGACGGTT
CGTGTGCTGT CGAGCAAGGT CGGGCAGCGC ACGCACTACG ATCCGGCAGG GCGCGTGTTG
CAGCAGACAA TCCAGCGATC GACGTCGCCT GCGCCGCTTG CCGAGCGGCG GTATCGCTAT
GATGCAGCCG GGCAGTTGTC GCGAATTGAG GACAGCCGCA AGGGCGGGAC CGACTATCGA
TACGATCCGG TCGGGCGTTT GATCGAGGCG GTCAGTCCCG TCGCGAAGGA GCGGTTCGCG
TTCGATCCGG CGAGCAACAT CATCGATCCG GTGCGGATTG CGGAGACGCC TGCATCGCGT
CCGAGCCCGG TGCGGCCGGA AAGCACGTTG CCGGTCGAGG TGCCGAAGGT GCTCGGGAAC
CTGCTGAAGG CGTACGCGGG AATGCACTTC GAGTACGACG CACGCGGAAA TCTGGTGCGC
AAGCGCACGC CTGCGGGGCA GCAGGAATAC GAGTGGGATG AATTCAATCG CTTGCTGTCT
GCGCGGGTTG CCGAGACGGC GCGGCAGAGT CAGGCGCGGT ATTTCTATGA CGCGTTCGGT
CGTCGTATTG CGAAGGAGGT GAACGGCGAG CGGACGGTGT TCGGGTGGGA TGGCGACACG
CTGGCGTACG AGAGTGACGG CGAGCGTGGC ACGCATTATC TCTACGAGCC GGGGACGTTC
GTGCCGCTGG CGCAGTATGT GGCGGGGCCG GTTGAGGGGA TCGAGACGCC GGAGTGGAAG
AGTACCGATC GCTATGTGCC GGAGGAAGAC CCGCTGCAGA AGGTGCCGGA GCGGCGGGGT
GACGCGGCGG TGTTCTATTA CCACTGTGAT CAGATTGGCA CGCCGCAGCT TCTAACGGAC
GATGATGGCG ATGTGGTCTG GGAAGCGTCG TACAAGGCGT GGGGCGAAGC GCGGGAAGTG
ATTGCGCGGG CGTCGAAGGC GGCGGGGATT GTGGCGAAGA ATCCGCTGCG GTTTCAGGGG
CAGCGGGTTG ACGAGGAAAC GGGGCTCGCC TACAACCGGT ATCGGTACTA CGATCCGAGT
TCGGGGCGCT TCGTGTCCAA GGATCCGATC GGATTGGCTG GCGACATCAA CGTTTATCGA
TACGCACCGA ATCCGATTGG GTGGGTTGAT CCGCTTGGCT TGCTTAAGCT GAACTATGAC
AAGAGTACGA GAAGTTGGAG CACACCGAAC GGATTGATTT ACGGCCAAGG ATCCAGACAT
GGCAATCGAG TTAAGCATGT TTTGGATCAC GAATCTCCCA ATCCGAAAAA AACGACTCAT
TCCGTGTTCT GCACATGCAA AAAAGGAGGT TCGTTAGACT TGGTAGACGA GGCTTGGGCA
AAGCGAGGTC GGCCTTTGAC TGACGACCCG GGAGCTTATG TTGTTCCGAT GGGGCGGGTT
GTAGGAACCG CCGGTGAAAC AAACGTAAGG ATAATTACTC GCCCTGGGAC TAACGAGGTT
ATATCGGCTT ATCCGGTGCA TTGA
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| Protein sequence | MAQQLPPGAE KEQAVSWLSD ISPKDVAAGG DRFNKWLLKI SGNHISFEDL KTVASAVPII
GNLMAFYDAV CDIVTIVEKR HADLLDYLGL AINLIGVIPV PPPLASFRLS ARPLLALVRN
QLLVSRGNLG AAIIGVLVAH VNAAAATEIE NFLKTLQEVL VDLLNDCAAK AQELMVGIAS
GLELALKGQI FDSSANVRRT QQIARKMGER SWYNPKLLVD AFEYGCEGSI ALGKEAGNAT
VGTAAKLAPD SWLQPFRDIV AFLKTEAPKV AKAIRDLNGS EEGKMLWLIA QVIEAVARVR
ASGKLREKTA DVPTGGKGRA HHDRPQEPVG AVEQHAHPEG PGQSPCKGCG VGASTGSIDF
AFGDETFTHT DFELPGALPL VWARTYRSRL SAYDTGELGA RWITPYTTRI DIEGDTWFYR
DASGRSIEYR ALAAGSVHDD LSENLTLSRL DDTWVTIAYG HDELHVYERR GNAFRLAMQK
DRAGNTITLD YDARDHVARL IDASGNVLSF EHDKHGRIVL IEQVLEDGKR RTLASYAYDE
AADLIRATDR HGNAWNYQYD RHLVTRYTDR TGRGMSLEWD GADAVDNANA KCVREYADDG
SLDIRLAWHP NIRLTYVTDA LGQTTRYYFN IKGYVYRIAY PDGNEEWFRR DEHNNLTLHI
LPDGSVEQMR YDARGNRTWH ERADGSIVEM AYDDKDQMIR LVDPNGHVWQ RKYDDAGNLV
EEIDPFEHST KYSYNDKGLP TQITDAKGGS KALEYNAAGQ LTGYTDCSGK KTAWRYDDIG
RAIETKDASG GVVAYAYGPN GQLTEIRSPA GVEHVQYDAE GRLLGHTDQL NRSTRYGYDA
VGRIASRADA LGQTIAYRYD RLGRLTALTD ANFATYQFRY DPAGRLIEEI AFDGKSTRYQ
YDPDSGSLVS IDEAGCVTSV DVDANGRLLK RIAGDSEERF AYDPSGRLID AVNRYSRVQF
FFDPVGNLVR EHHAYDLFGD RRSYVWHHEY DELGNRRRTV RPDGHAVDWL MYGSGHVHGM
LLDGEERVQF ERDDLHRETV RVLSSKVGQR THYDPAGRVL QQTIQRSTSP APLAERRYRY
DAAGQLSRIE DSRKGGTDYR YDPVGRLIEA VSPVAKERFA FDPASNIIDP VRIAETPASR
PSPVRPESTL PVEVPKVLGN LLKAYAGMHF EYDARGNLVR KRTPAGQQEY EWDEFNRLLS
ARVAETARQS QARYFYDAFG RRIAKEVNGE RTVFGWDGDT LAYESDGERG THYLYEPGTF
VPLAQYVAGP VEGIETPEWK STDRYVPEED PLQKVPERRG DAAVFYYHCD QIGTPQLLTD
DDGDVVWEAS YKAWGEAREV IARASKAAGI VAKNPLRFQG QRVDEETGLA YNRYRYYDPS
SGRFVSKDPI GLAGDINVYR YAPNPIGWVD PLGLLKLNYD KSTRSWSTPN GLIYGQGSRH
GNRVKHVLDH ESPNPKKTTH SVFCTCKKGG SLDLVDEAWA KRGRPLTDDP GAYVVPMGRV
VGTAGETNVR IITRPGTNEV ISAYPVH
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