Gene Swoo_4869 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_4869 
Symbol 
ID6119246 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand
Start bp5857118 
End bp5858131 
Gene Length1014 bp 
Protein Length337 aa 
Translation table11 
GC content46% 
IMG OID641636450 
ProductAraC family transcriptional regulator 
Protein accessionYP_001763213 
Protein GI170729187 
COG category[K] Transcription 
COG ID[COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones46 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAAGACTA TCTATATATT GGCGGCTGGT AATGTCGTTG CTGGTGGTAT TATCAGTTTC 
TTGGATGTGT TCAGCTTCTG TAATACCTAT TGGCGGCGTA TGAACCCTGG CATTAGTGAA
GATCTGTTTC ACTGCCATGT GATTTCGCCT GACGGCAAGC CTGTTAATAC CAATCAAGGG
ATACAGGTTC CAGCAATTGG ATTGGAGGAG CCGGAAGATA TCTTAAATGC GGATGCGGTT
ATTTTAGCTT CAGCCTTTGT GACTAACCGC GAGGAGTTTC AGCATTATCT TGAAGATTTT
ACACCTCTTT TTAAACCCTT AACTCTCTTT GCTGCTTCTG AAAAGCCCCT TGCTGCATAC
TGCTCTGGAA CCATGATGTT AGCCGCATCA GGTTTACTCA ATGGTAGGAG GGCGACTACT
GTTTGGTGGT TGAGTGAGAT GTTTGAGCGT AACTTTCCAA AGGTGAGCCT CTGCCTTGAA
CACTTGGTTG TTTCCGATGG TCATCTGCAT ACCGCGGGGG CAACCACCTC CAATTTGAGT
TTGGCATTGC ACATCATAGG TTTATTGGCG GGAGAGCAAG TTGCCAACCA GATGGCTAAG
ATACTGTTGA TCTCACCGAA TAGGAGCTCA CAACAGCCCT TTATGAATAT GGCGTTGGCT
GTGGATGGCC ATAATCATAA AGATGAATTG GTCACTAAGA TTCAAAACTG GATGCAGCAG
CATATTCAGC AAAGCTTTCT GCTTGATGAG GTTGCCGATA AGTTTGCTGT GGGAAAACGT
ACCTTAATTA GGCGCTTTAA GAAGGCGCTA AATGAAACAC CTGCCAGCTA TATGCAGCGT
TTGCGTGTTG ATGAGGCTAA ACGCCTGCTT GAAACGACAG AGTTAGCTCT GGAGCAGATA
GTTGAGCGGG TAGGCTATGA GGATGTTAGC TCATTTCGAA AGTTGTTTAT CCAACTGACC
AGCCTTTCTC CCCGCGCATA TCGACAGAAG TTCAACACTC ATGCTTGCTG TTGA
 
Protein sequence
MKTIYILAAG NVVAGGIISF LDVFSFCNTY WRRMNPGISE DLFHCHVISP DGKPVNTNQG 
IQVPAIGLEE PEDILNADAV ILASAFVTNR EEFQHYLEDF TPLFKPLTLF AASEKPLAAY
CSGTMMLAAS GLLNGRRATT VWWLSEMFER NFPKVSLCLE HLVVSDGHLH TAGATTSNLS
LALHIIGLLA GEQVANQMAK ILLISPNRSS QQPFMNMALA VDGHNHKDEL VTKIQNWMQQ
HIQQSFLLDE VADKFAVGKR TLIRRFKKAL NETPASYMQR LRVDEAKRLL ETTELALEQI
VERVGYEDVS SFRKLFIQLT SLSPRAYRQK FNTHACC