| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_4850 |
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| Symbol | |
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| ID | 6119227 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 5839763 |
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| End bp | 5840920 |
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| Gene Length | 1158 bp |
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| Protein Length | 385 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 641636431 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_001763194 |
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| Protein GI | 170729168 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 41 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAAAA TATTATCGTT TGCATTTATT TTACTTAGCG TCTCTCTTTT GATCTTGGTA
AGTAAAGAGA AATCTCTATC TGACGGTCTT GTTGTTGATA CTCATGTTGT TTCAGAAGAT
AAAATTAATG ACACCATTTT GGCATCTGGC AACTTAAGGT TTGCCAGTGA AATTCAGATC
CGTTCAGAGG TTACTGGCAT TGTTGATCAA GTTTACGTTA AGGAGGGGCA ACTTGTAGAA
AAAGGTGACC TTCTTATGGA GTTAGATCCA GAAATCTTTA TTGCTGAGGT TCGAAAAGCT
CGTGCTTCTG TTGAGATTCA GCTCATTGAG ATCCAACGAT TAGAGGAGCT AGCCAATGAG
GCCGCTCGAC GTGCTGGGCA GTATCGAGAG TTATTGGGTA AAGGGTTAAC GGATCAAGAT
ACTGCGGCAC AATTACAGAG CCAGTTGAAA GTTGCCAAGA TTAATGTGAG AGCGGCAAAA
CAGGGATTGG AGCAATATAA AGCTATCTTA GCTCAAAGTC AGAGCCGCCT TGATAAGTCT
CGTTTCCATG CCGCAATTGA TGGTTTGATC TCTACTGTTG ATATTAAAGA GGGAGAAACG
GTTATTGCTG GGACAACCAA TATTATAGGT AGCCCGCTAA TGACTTTGGC TGATGTTGAC
TCTTATGTCG CTCAGATCAG AGTGGATGAA GCTGATGTTG CTAACATTGA ACTTGGTCAG
GAGGTCGAGG TATTTGCTGC TGCAACCCCA CAAATGGCTT CCTTGGGACG GATATCCTCA
ATTAGTACAT CTGCCAGAAA AGATGGTGTG AATAAGGGCC TTTACTACAA GGTAGAGGTG
ATGCTTCAAA AAGAGCAGTT CGCATACCCA GGTATGAGCT GTCGTGCCGA GATTGTTTTA
GCCCGTTCAG ATGTTGAATT AATTATACCT ATCGCTGCGG TAAAACAGTT TGATGGTAAA
AGTTATGTTT GGGTGGTTGA GGAGAATAAA GCTGTAAGAC GAAATATTCA GCTTGGTTTG
TCTACTGACA CTGAGCAGAT AGTGCTATCA GGGCTGAGCA ATAAAGAAGT TGTCATTGTT
GGGCCTAGTC GCCAAGTCAA AGCGTTAAAA GAGGGCGCAG AGGTACAGCA TAAGGAGAGT
TACCATGCAT CACTCTAA
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| Protein sequence | MKKILSFAFI LLSVSLLILV SKEKSLSDGL VVDTHVVSED KINDTILASG NLRFASEIQI
RSEVTGIVDQ VYVKEGQLVE KGDLLMELDP EIFIAEVRKA RASVEIQLIE IQRLEELANE
AARRAGQYRE LLGKGLTDQD TAAQLQSQLK VAKINVRAAK QGLEQYKAIL AQSQSRLDKS
RFHAAIDGLI STVDIKEGET VIAGTTNIIG SPLMTLADVD SYVAQIRVDE ADVANIELGQ
EVEVFAAATP QMASLGRISS ISTSARKDGV NKGLYYKVEV MLQKEQFAYP GMSCRAEIVL
ARSDVELIIP IAAVKQFDGK SYVWVVEENK AVRRNIQLGL STDTEQIVLS GLSNKEVVIV
GPSRQVKALK EGAEVQHKES YHASL
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