Gene Swoo_4849 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_4849 
Symbol 
ID6119226 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand
Start bp5839057 
End bp5839776 
Gene Length720 bp 
Protein Length239 aa 
Translation table11 
GC content41% 
IMG OID641636430 
ProductABC transporter related 
Protein accessionYP_001763193 
Protein GI170729167 
COG category[V] Defense mechanisms 
COG ID[COG1136] ABC-type antimicrobial peptide transport system, ATPase component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones43 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCATCACT CTAAACCTGT TATCCAATTA AAAGGTGTGA CTAAAACTTA TCAAATTGGT 
GATGAAGGTT ACACCGCGTT GAAAGGTGTC GACCTCTCTA TTCATACTAA TGAGTTTGTT
GCTATTACTG GTCCTTCGGG GTCAGGAAAG TCTACCTTGA TGAATATTCT TGGGTGCCTG
TCGACGCCAA CAACTGGTGC TTATCAACTT AATAGTCAAG ATGTGGCTAA TTATGATGAG
GATAAATTAG CTCACGTTAG AAACTATTCT ATCGGGTTTA TTTTCCAAAG TTTCAACTTG
TTACCTAGAC AGAGCATATT ACAAAACGTG ATACATCCTC TTAAGTACCG TGCTATGTCA
TCGAAAGAAC GTAAAAGCCG AGCTTTGAAT GCTTTAGAGA AGGTTGGACT TGGAGATAAA
GTTAAGTCAC TTCCGAGTCA GTTGTCTGGA GGACAGAGAC AAAGAGTTGC CATAGCGAGA
GCTTTAGTGA CGGAGCCTGA AATATTGTTA GGTGATGAAC CAACAGGAAA CCTGGATAGT
AAGACAACCC AGGAGATTAT GGCGTTATTT GATCAGCTAC ACGCTCAAGG TCAAACAATT
GTATTGGTGA CCCATGAGCA AGATATTGCA GAGCATTGTC AGCGAGAGAT TCGATTGGTC
GATGGGCTAT TAGCATCGGA TGTATCAAAG AGTAAAGTGG AGTGGGGGTT AGCATGCTAA
 
Protein sequence
MHHSKPVIQL KGVTKTYQIG DEGYTALKGV DLSIHTNEFV AITGPSGSGK STLMNILGCL 
STPTTGAYQL NSQDVANYDE DKLAHVRNYS IGFIFQSFNL LPRQSILQNV IHPLKYRAMS
SKERKSRALN ALEKVGLGDK VKSLPSQLSG GQRQRVAIAR ALVTEPEILL GDEPTGNLDS
KTTQEIMALF DQLHAQGQTI VLVTHEQDIA EHCQREIRLV DGLLASDVSK SKVEWGLAC