| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_4781 |
|---|
| Symbol | |
|---|
| ID | 6119158 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | - |
|---|
| Start bp | 5769679 |
|---|
| End bp | 5770353 |
|---|
| Gene Length | 675 bp |
|---|
| Protein Length | 224 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 641636362 |
|---|
| Product | pseudouridine synthase Rlu family protein |
|---|
| Protein accession | YP_001763125 |
|---|
| Protein GI | 170729099 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
|---|
| TIGRFAM ID | [TIGR01621] pseudouridine synthase Rlu family protein, TIGR01621 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.0134814 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 0 |
|---|
| Fosmid unclonability p-value | 0.0000000101532 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | unclonable |
|---|
| |
Sequence |
| Gene sequence | ATGTACCAGA TAGTTGCCGA TGAAACCGAT TTTATCGTGA TCGCTAAGTC CCATAATGTT
CATTTTCATA GTCAAGATGG TAGTGCTGGT GTGATGGCGA AGCTTGAGCA AGATTTAGGG
GTTAAACTCT TTTCTGTGCA TAGACTAGAT ACCTTGACGT CGGGGCTTTT GTTGTTTGCT
AAGTCGAGTC AAGCAGCTGC TGAGTTTACC CGTTTGTTTA CTGAGCATAG AGTACAGAAG
TATTATCTAG CTTTAGCGAA AGGAAAGCCA AAGAAGAAGC AAGGCTCGAT TATTGGTGAT
ATGGCTAAGT CTCGCCGTAG CATGTATAAA TTGATGAGAA CTATGGATAA TCCGGCTAAA
ACGCAGTTCT TCTCTCAGTC GGTGGCAGAG GGGCTACGTC TGTATCTGCT AAAGCCGTTA
AGTGGCAAGA CTCACCAGTT AAGAGTTGCA CTTGCGAGTA TAGGTGTGCC TATTTTAGGT
GATACACTTT ATGGTGGTGA GGAGTCGGAC AGAGGCTACT TGCACGCCTT TAGTTTGCAC
TTTATTTTTA GCGGTAAAGA GTATCAATAC ATCAATTACC CTAGTGAGGG AGTGAGTTTT
ACTGCCCTTA ATACAATAAA GCAGTTGCAA ATGTGGTCAG AGCCTGAGAA GTTAGATTGG
CCTAAACAGA AATAA
|
|---|
| Protein sequence | MYQIVADETD FIVIAKSHNV HFHSQDGSAG VMAKLEQDLG VKLFSVHRLD TLTSGLLLFA
KSSQAAAEFT RLFTEHRVQK YYLALAKGKP KKKQGSIIGD MAKSRRSMYK LMRTMDNPAK
TQFFSQSVAE GLRLYLLKPL SGKTHQLRVA LASIGVPILG DTLYGGEESD RGYLHAFSLH
FIFSGKEYQY INYPSEGVSF TALNTIKQLQ MWSEPEKLDW PKQK
|
|---|
| |