| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_4739 |
|---|
| Symbol | |
|---|
| ID | 6119116 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | - |
|---|
| Start bp | 5719039 |
|---|
| End bp | 5720433 |
|---|
| Gene Length | 1395 bp |
|---|
| Protein Length | 464 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 641636321 |
|---|
| Product | glutamate decarboxylase |
|---|
| Protein accession | YP_001763084 |
|---|
| Protein GI | 170729058 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0076] Glutamate decarboxylase and related PLP-dependent proteins |
|---|
| TIGRFAM ID | [TIGR01788] glutamate decarboxylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCTCTTC ATTCCAAGGA TACGGTTAGA GATGACCTTC TCGATGACAT CTACTCGTCA
GCTGACCTGG CCCTATCTAT GCCAAAGTAC AAAATGCCTG AACAGGAACA TGACTCTCGC
CATGTTTATC AGGTTATTCA CGATGAACTC ATGATGGACG GTAACTCGCG ACAGAATCTG
GCGACATTTT GTCAGACTTG GGTCGAAGAT GAAGTGCACA AGCTGATGGA TGAATGTATC
GATAAGAATA TGATCGATAA AGATGAATAT CCTCAGACGG CTGAGCTTGA GGCTCGCTGT
GTGCATATGT TGGCAGATCT GTGGCACTCA CCGGATGCGG AGAACACCTT AGGTTGCTCC
ACAACGGGTT CGAGTGAAGC CGCCATGTTA GGTGGAATGG CGCTGAAATG GGCTTGGCGT
GAAAAGATGA GAAAGCTAGG TAAGCCAACG GATAAGCCAA ATTTAATCTG TGGTCCAGTG
CAGGTGTGTT GGCATAAGTT TGCTCGCTAC TGGGATATTG AGCTACGTGA GATCCCGATG
GAGGGTGATC GCCTCATCAT GACGCCTGAA GAGGTGATTA AACGCTGTGA TGAAAACACC
ATAGGTGTAG TGCCCACACT TGGTGTTACC TTTACCTGCC AATATGAGCC AGTTAAGGCG
GTACATGAAG CCTTAGATCA GCTACAAAAA GACACTGGCT TAGATATCCC CATGCATATT
GATGCTGCCA GTGGTGGTTT CTTAGCACCA TTTTGCGATC CAGACCTTGA GTGGGACTTC
CGCTTGCCTC GAGTTAAGTC TATTAATGCT TCCGGACATA AGTTTGGTTT GAGCCCGTTA
GGGGTGGGCT GGGTGATCTG GCGTGATGCG TCAGCACTGG ATAAAGATCT TATCTTCAAT
GTGAACTATC TAGGTGGCAA TATGCCGACC TTTGCATTGA ACTTCTCCCG TCCTGGCGGT
CAGATCGTGG CGCAATATTA CAACTTTTTG CGTTTAGGCC GAGAGGGATA TCGCAAGATA
CATCAAGCTT GCTATGACAC TGCGATCTAC CTCTCAGGAG AGATCGAGAA GATGGGGATG
TTTGACATTA TCTATGATGG CCAAGGTGGT ATTCCTGCCA TGAGTTGGTC GTTGAAAGAG
GGGGTTGAAC CAGGCTTTAA CCTATTTGAC CTTTCCGATC GGATCCGCTC CCGTGGTTGG
CAAATTGCCG CCTATGCGAT GCCGCCAAAG CGGGAAGATT TAGTGATTAT GCGTATCTTA
GTTCGTCATG GCTTTAGTCG GGATCAAGCC GATCTCTTGG TGGCCGATCT GCAGCATTGT
GTCGACTTTT TTGCAAAACA TCCTATTTCA CATAGCAGTG ATGAAGCGGA ATCTGCAGGT
TTCAATCACG GTTAG
|
|---|
| Protein sequence | MPLHSKDTVR DDLLDDIYSS ADLALSMPKY KMPEQEHDSR HVYQVIHDEL MMDGNSRQNL
ATFCQTWVED EVHKLMDECI DKNMIDKDEY PQTAELEARC VHMLADLWHS PDAENTLGCS
TTGSSEAAML GGMALKWAWR EKMRKLGKPT DKPNLICGPV QVCWHKFARY WDIELREIPM
EGDRLIMTPE EVIKRCDENT IGVVPTLGVT FTCQYEPVKA VHEALDQLQK DTGLDIPMHI
DAASGGFLAP FCDPDLEWDF RLPRVKSINA SGHKFGLSPL GVGWVIWRDA SALDKDLIFN
VNYLGGNMPT FALNFSRPGG QIVAQYYNFL RLGREGYRKI HQACYDTAIY LSGEIEKMGM
FDIIYDGQGG IPAMSWSLKE GVEPGFNLFD LSDRIRSRGW QIAAYAMPPK REDLVIMRIL
VRHGFSRDQA DLLVADLQHC VDFFAKHPIS HSSDEAESAG FNHG
|
|---|
| |