| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_4697 |
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| Symbol | rpoB |
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| ID | 6119066 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 5665759 |
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| End bp | 5669790 |
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| Gene Length | 4032 bp |
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| Protein Length | 1343 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 641636271 |
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| Product | DNA-directed RNA polymerase subunit beta |
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| Protein accession | YP_001763042 |
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| Protein GI | 170729016 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.117256 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.00000343099 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGTTTACT CCTATTCTGA AAAGAAGCGT ATTCGCAAAG ATTTTGGTAA ACGTCCACAG
GTTTTGGATA TTCCTTATCT TTTGTCTATA CAGTTGGACT CATTTAAAAA GTTCACCGAT
CAAGATCCTA CAGGTGAGCG TGGTTTTGAA GCCGCTTTCC GTAGCGTTTT TCCCATCAAA
AGTTTTTCTG GTAACTCAGA ATTACAGTAC GTTAGCTATA AGCTAGGCGA ACCTGTTTTT
GATGTGAAAG AGTGTCAAAT CCGCGGCGTA ACTTACTCTG CACCATTGCG CGTTAAATTG
CGTATGGTTC TGTATGACCG TGAAGCAGCA CCTGGCACAG TCAAAGACAT TAAAGAGCAA
GAAGTCTACA TGGGGGATAT CCCTCTGATG ACTGAAAACG GTACCTTTGT TATCAATGGT
ACTGAGCGTG TTATCGTTTC TCAGCTACAC CGTTCACCTG GTGTATTCTT TGATCATGAC
CGCGGCAAGA CCCACTCTTC AGGTAAGGTG CTTTATAACG CACGTATTAT TCCTTACCGT
GGTTCTTGGT TAGATTTCGA ATTCGATCCT AAAGATGCAC TATTTGTACG TATTGACCGT
CGTCGTAAAC TTGCGGCTTC AATCATCCTA CGTGCACTAG ACTACTCTAC TCAGGATATT
TTGGATCTGT TCTTCGATCG CGTTAACTTT AAGATCAAGA AAGATTCATT AGTGATGGAC
CTTGTTGCAG AGCGCCTACG TGGTGAAACT GCCAGCTACG ACATTAAAGA TGTTGAAGGT
ACTATCATCG TTGAGAAAGG ACGTCGTATT ACTGCACGTC ATATTCGTCA ACTTGAGAAG
AGCAATACCA CTGAGCTTGA AGTGCCAGTA GATTACATCG TTGGTAAGAT TTCAGGTCAA
GACTATATTG ATCCTGATAC TGGCGAAGTA TTGGTTTCTG CTAACGCAGA GATGACACTT
GAAGATCTTG CTAAGCTTTC TTTGGCTGGT ATCAAAGAGA TAAGCACACT GTATATCAAC
GAGCTTGATA ATGGTGCTTA TATGTCAGAT ACATTGCGTA TTGATTCTAC AACTAACCGC
CTTGAAGCGT TGGTTGAGAT CTACCGTATG ATGCGTCCTG GCGAGCCACC AACCAAAGAT
GCTGCAGAAG CGTTATTCCA GAACTTGTTC TTCAGTGAAG AGCGTTATGA TCTATCTAAA
GTAGGTCGTA TGAAGTTCAA CCGTCGTCTC GGTATCGATG ATGACGAAGG TACTGGCATT
CTATCTAAAG AAGATATCGT TGCTGTAATG AAGAACATCA TCACTATCCG TAATGGTAAT
GATGAAGTTG ATGATATCGA TCACTTGGGT AACCGTCGTA TCCGTAGTGT TGGTGAAATG
GCTGAAAACC AGTTCCGTGT TGGTCTAGTT CGTGTAGAAC GTGCCGTACG TGAGCGTTTA
AGCCTTGGTG ATCTTAATGA GCTAATGCCA CAAGATCTTA TCAACGCTAA GCCAATCTCT
GCAGCAGTTA AAGAGTTCTT CGGTTCTTCT CAGCTGTCTC AGTTTATGGA TCAGAACAAC
CCACTTTCAG AAGTGACACA TAAGCGCCGT ATTTCGGCTC TTGGTCCAGG TGGTTTGACC
CGTGAACGTG CTGGTTTTGA AGTTCGAGAT GTACACCCAA CTCACTACGG TCGTTTATGT
CCAATTGAGA CCCCTGAAGG TCCAAACATT GGTCTAATTA ACTCGTTAGC AAGTTTTGCG
CGTACTAACT CTTATGGTTT CCTTGAAACA CCTTACCGTA AGGTTATTGA TGGTGTGGTT
ACTGATCAGG TCGATTACCT ATCAGCAATC GAAGAGGGCC GTTACGTTAT TGCACAGGCT
ATCGTCGACT TAGACGAAAA TGGCCGCATG ATGGATGAGC TTATCGCTTG TCGTCATAAA
GGTGATTCAA CCTTTATGGG TGCTGCAGAT ATCCAATATA TGGATGTATC GCCACAGCAG
ATCATTTCAG TTGCAGCATC ACTTATTCCG TTCCTAGAAC ACGATGATGC TAACCGCGCC
TTGATGGGTG CGAACATGCA ACGTCAGGCT GTACCAACAC TAAAGGCTGA TAAGCCACTA
GTAGGTACAG GTATTGAGCG TACACTTGCT GTTGATTCTG GTGTTGTTGT CGTTGCTAAG
CGTGGCGGTT ACATCGACTA TGTTGATGCA AGTCGTATCG TTGTTAAGGT TAACGAATCT
GAGCTACGTC CAGGCGAAGC TGGTATCGAT ATCTACAACT TGACTAAGTA CACGCGTTCT
AACCAGAACA CCTGTATTAA CCAACGTCCT TGTTGTGCGA TGGGCGATCC AGTTGTGACT
GGTGACGTTC TTGCTGATGG TCCATCTACC GATTTGGGTG ATTTGGCTCT TGGTCAGAAC
ATGCGTATCG CGTTCATGCC TTGGAACGGT TACAACTTTG AGGATTCGAT CCTTATTTCT
GAGCGTGTAG CTCAAGAAGA TCGTTTCACC ACTATCCACA TTCAAGAGCT TTCATGTATC
GCTCGTGATA CTAAGTTGGG TAGTGAAGAG ATCACAGCTG ATATTCCAAA CGTTGGTGAA
TCTGCGCTTT CTAAGCTAGA TGAATCAGGT ATCGTTTATA TCGGTGCTGA AGTTAAGGGT
GGCGACATTC TGGTTGGTAA GGTGACACCT AAGGGTGAAA CTCAGCTGAC TCCAGAAGAG
AAGCTTCTCC GTGCTATCTT CGGTGAGAAG GCCTCTGATG TTAAAGACAG CTCTCTACGC
GTACCTAACT CTGTTAAAGG TACTATCATT GACGTTCAGG TATTTACCCG TGACGGCGTT
GAGAAAGATA AGCGTGCTGT TGAAATTGAA GAGATGCATG TTCGTCAAGC TAAGAAAGAC
TTGACTGAAG AGTTCCAGAT CCTCGAAGAG GGTGTTTATG GACGTGCACG TAACCTTCTA
CTGAGTGCTG GCTTCAACGA AGCTCAATTG GATGCTATTC CACGTTCACA ACTGCTTTCT
CAAAGCATTG ATGACGAAGG TAAGCAGACT GAACTAGAGC AGCTTGCTGA GCAGCATGAC
GAGCTTAAAG CTGACTTCGA TAAGAAGTTT GAAGTTAAGC GTCGCAAGAT CACTCAAGGT
GATGACTTAG CACCTGGCGT ACTTAAGATT GTTAAGGTTT ACCTAGCAGT TAAGCGTACA
ATCCAGCCTG GTGATAAGAT GGCGGGTCGT CATGGTAACA AGGGTGTTAT CTCTAAGATT
AACCCTGTTG AAGATATGCC TTACGATGAG AATGGTAACC CAATCGACAT CGTACTGAAC
CCACTTGGTG TACCATCGCG TATGAACATC GGTCAGGTTC TTGAGGTGCA TCTTGGCGCA
GCAGCTAAAG GTATCGGTGA TAAGATCGCT GCAATGCTTG AAGAACAGCG TGAACTTGCT
GAACTTCGTG GCTACATCAA AGAAGTTTAT GAGTTAGGTG AAGAGGTGCA GCAGCGCGTC
GATATCGATT CATTTACTGA TGATGAAGTG GTTCGTCTTG CTAAGAACCT TAAAGGTGGT
ATCCCGACTG CGACTCCAGC ATTCGATGGC GCGAAAGAGA AAGAGATCAA GGAGATGCTA
GCATTAGCTG GTCTTCCTAC TACTGGTCAG CGCAAATTGT TTGATGGTCG TACCGGTGAT
GAGTTTGAGC GTCAGGTAAC TGTTGGTTAC ATGTACATGC TAAAACTTAA CCACTTGGTT
GATGATAAGA TGCATGCTCG TTCTACGGGT TCTTACAGTC TTGTTACTCA GCAGCCATTG
GGTGGTAAAG CTCAGTTTGG TGGTCAGCGT TTCGGTGAGA TGGAAGTTTG GGCACTAGAA
GCATACGGTG CCGCTTATAC GCTTCAAGAG ATGCTAACTG TTAAGTCTGA TGATGTTAAC
GGTCGTACCA ATATGTATAA GAATATTGTC GACGGTAACC ACCAGATGCA ACCAGGCATG
CCAGAGTCTT TCAACGTATT GTTGAAGGAG ATCCGTTCAC TCGGTATTAA TATCGAGTTG
GATCAAGACT AA
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| Protein sequence | MVYSYSEKKR IRKDFGKRPQ VLDIPYLLSI QLDSFKKFTD QDPTGERGFE AAFRSVFPIK
SFSGNSELQY VSYKLGEPVF DVKECQIRGV TYSAPLRVKL RMVLYDREAA PGTVKDIKEQ
EVYMGDIPLM TENGTFVING TERVIVSQLH RSPGVFFDHD RGKTHSSGKV LYNARIIPYR
GSWLDFEFDP KDALFVRIDR RRKLAASIIL RALDYSTQDI LDLFFDRVNF KIKKDSLVMD
LVAERLRGET ASYDIKDVEG TIIVEKGRRI TARHIRQLEK SNTTELEVPV DYIVGKISGQ
DYIDPDTGEV LVSANAEMTL EDLAKLSLAG IKEISTLYIN ELDNGAYMSD TLRIDSTTNR
LEALVEIYRM MRPGEPPTKD AAEALFQNLF FSEERYDLSK VGRMKFNRRL GIDDDEGTGI
LSKEDIVAVM KNIITIRNGN DEVDDIDHLG NRRIRSVGEM AENQFRVGLV RVERAVRERL
SLGDLNELMP QDLINAKPIS AAVKEFFGSS QLSQFMDQNN PLSEVTHKRR ISALGPGGLT
RERAGFEVRD VHPTHYGRLC PIETPEGPNI GLINSLASFA RTNSYGFLET PYRKVIDGVV
TDQVDYLSAI EEGRYVIAQA IVDLDENGRM MDELIACRHK GDSTFMGAAD IQYMDVSPQQ
IISVAASLIP FLEHDDANRA LMGANMQRQA VPTLKADKPL VGTGIERTLA VDSGVVVVAK
RGGYIDYVDA SRIVVKVNES ELRPGEAGID IYNLTKYTRS NQNTCINQRP CCAMGDPVVT
GDVLADGPST DLGDLALGQN MRIAFMPWNG YNFEDSILIS ERVAQEDRFT TIHIQELSCI
ARDTKLGSEE ITADIPNVGE SALSKLDESG IVYIGAEVKG GDILVGKVTP KGETQLTPEE
KLLRAIFGEK ASDVKDSSLR VPNSVKGTII DVQVFTRDGV EKDKRAVEIE EMHVRQAKKD
LTEEFQILEE GVYGRARNLL LSAGFNEAQL DAIPRSQLLS QSIDDEGKQT ELEQLAEQHD
ELKADFDKKF EVKRRKITQG DDLAPGVLKI VKVYLAVKRT IQPGDKMAGR HGNKGVISKI
NPVEDMPYDE NGNPIDIVLN PLGVPSRMNI GQVLEVHLGA AAKGIGDKIA AMLEEQRELA
ELRGYIKEVY ELGEEVQQRV DIDSFTDDEV VRLAKNLKGG IPTATPAFDG AKEKEIKEML
ALAGLPTTGQ RKLFDGRTGD EFERQVTVGY MYMLKLNHLV DDKMHARSTG SYSLVTQQPL
GGKAQFGGQR FGEMEVWALE AYGAAYTLQE MLTVKSDDVN GRTNMYKNIV DGNHQMQPGM
PESFNVLLKE IRSLGINIEL DQD
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