Gene Swoo_4666 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_4666 
SymbolrpsD 
ID6119035 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand
Start bp5644333 
End bp5644953 
Gene Length621 bp 
Protein Length206 aa 
Translation table11 
GC content45% 
IMG OID641636240 
Product30S ribosomal protein S4 
Protein accessionYP_001763011 
Protein GI170728985 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0522] Ribosomal protein S4 and related proteins 
TIGRFAM ID[TIGR01017] ribosomal protein S4, bacterial/organelle type 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000332608 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00000000965042 
Fosmid HitchhikerNo 
Fosmid clonabilityunclonable 
 

Sequence

Gene sequence
ATGGCAAGAT ACTTGGGTCC AAAGCTCAAG CTCAGCCGCA GAGAAGGTAC AGACCTTTTC 
CTAAAAAGCG GCGTGAGAGC AATCGATTCG AAGTGTAAGC TTGAAACTGC ACCTGGACAA
CACGGCGCTC GTAAGACCCG TCTGTCTGAG TATGGTGTTC AGCTACGCGA GAAGCAAAAA
GTTCGTCGTA CTTACGGTGT GCTAGAAAAG CAATTCCGTA ACTACTACAA AGACGCTGCA
CGTACTAAAG GTAACACTGG TGAGAACCTA CTTACTCTTT TAGAAACCCG TCTTGATAAC
GTTGTATACC GTATGGGCTT CGGTGCTACA CGTGCAGAAG CACGTCAGCT AGTAAGCCAT
AAGTCTATTA TGGTAAACGG CAGCGTTGTT AACATTCCAT CATTCAAAGT GTCTGCGAAT
GATGTAATTA GCATTCGTGA GAAGTCTAAG AAGCAAGCAC GTATTATTGC TGCTTTGGAA
GTTTCTTCTC AACGCGAAAA GCCAACATGG GTTGAAGTTG ATAACACTAA GATGGAAGGT
GCTTTCAAGC GTCTACCAGA GCGTAGTGAT TTATCTGCGG AAATTAACGA ACAGCTCATC
GTCGAACTTT ACTCTAAGTA A
 
Protein sequence
MARYLGPKLK LSRREGTDLF LKSGVRAIDS KCKLETAPGQ HGARKTRLSE YGVQLREKQK 
VRRTYGVLEK QFRNYYKDAA RTKGNTGENL LTLLETRLDN VVYRMGFGAT RAEARQLVSH
KSIMVNGSVV NIPSFKVSAN DVISIREKSK KQARIIAALE VSSQREKPTW VEVDNTKMEG
AFKRLPERSD LSAEINEQLI VELYSK